User: Alex Koeppel

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Alex Koeppel10
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Posts by Alex Koeppel

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Count Reads Mapping To Introns, Extragenic Regions
... Hello everyone, I have some SAM/BAM files containing the alignments of some RNA-seq reads to hg19. I'm interested in calculating some mapping statistics, specifically, the percentage of reads mapping to exons, introns, and extragenic regions. I gather that this can be done with bedtools, but I'm f ...
gff bedtools written 5.0 years ago by Alex Koeppel10 • updated 5.0 years ago by Jennifer Hillman Jackson24k

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