User: atcglj

gravatar for atcglj
atcglj10
Reputation:
10
Status:
New User
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Last seen:
1 month, 4 weeks ago
Joined:
4 months, 4 weeks ago
Email:
a*****@gmail.com

Posts by atcglj

<prev • 6 results • page 1 of 1 • next >
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Trinity error on usegalaxy.org
... Hello, I am running the trinity on usegalaxy.org , and I got an error message as below. workdir is /pylon5/mc48nsp/xcgalaxy/main_staging/15649141/working Running Trinity from /local/1024628 Trinity version: v2.2.0 -ERROR: couldn't run the network check to confirm latest Trinity software version. S ...
trinity written 8 weeks ago by atcglj10 • updated 7 weeks ago by Jennifer Hillman Jackson22k
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Error of installing local Galaxy
... I am trying to install my own local galaxy in my computer. It is OK to run git clone -b release_17.01 https://github.com/galaxyproject/galaxy.git But I got an error message as below when I typed sh run.sh Could anybody help me? Thanks. sh run.sh Activating virtualenv at .venv Requirement already s ...
galaxy written 3 months ago by atcglj10
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Comment: A: fail to upload BAM file
... I found my Samtools located in /home/lun/galaxy-dev/database/dependencies/samtools, as well as my Picard and Bamtools. I got all these tools from the Galaxy Main tool Shed automatically in the Admin page of my local Galaxy. Is this fold the Galaxy user's path? I found that there are so many samtoo ...
written 4 months ago by atcglj10
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fail to upload BAM file
... Hello, I have the samtools and bamtools installed in my local galaxy. But this error below was always reported while I was uploading BAM files. Traceback (most recent call last): File "/home/lun/galaxy-dev/tools/data_source/upload.py", line 425, in __main__() File "/home/lun/galaxy-dev/to ...
bam written 4 months ago by atcglj10 • updated 4 months ago by Jennifer Hillman Jackson22k
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Comment: A: Galaxy failed to unzip gz files after uploading
... It happened to me just now. ...
written 4 months ago by atcglj10
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fastq.gz file can not auto uncompress
... I uploaded two fastq.gz files to usegalaxy.org using FTP. The first one worked well. The second one seemed could not be uncompressed automatical and show "uploaded fastq.gz file" and "format: fastq.gz" in the preview window of History. The first one show "format: fastq" and my sequences detail as us ...
galaxy written 4 months ago by atcglj10 • updated 4 months ago by Martin Čech ♦♦ 3.9k

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