User: stefano cardinale

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Posts by stefano cardinale

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picard: command not found
... Hello, I am using the most recent Galaxy release and I have picard installed and working from command line. I also installed it through the Galaxy tool-shed but when I use it I get the following error: Fatal error: Exit code 127 () /HOME/galaxy/database/jobs_directory/000/6/tool_script.sh: line 9: ...
picard local install conda 17_05 written 9 weeks ago by stefano cardinale20 • updated 9 weeks ago by Jennifer Hillman Jackson22k
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Error In .Vcf .Bcf Files From Freebayes And Mpileup
... Hi, I run a very regular BWA mapping with a public reference genome sequence and then I tried to do some variant analysis with both mpileup and freeBayes tools. These jobs run just fine, but then when I went to convert these files to a .maf format or using the bcf2vcf converter there were errors in ...
mpileup alignment bwa written 4.6 years ago by stefano cardinale20

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