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Posts by kerrynewbrook
... Hi, I was hoping that someone might be able to give me some advice on adjusting or controlling for batch effects in RNA-Seq data? I have performed principle component analysis (PCA) and hierarchical clustering analysis on normalised expression data (Cuffnorm) from an RNA-Seq experiment. During the ...
... I have completed CuffDiff analysis on my transcriptomics data and I am currently trying to look at replicate variation within my treatment groups using my CuffNorm output. I have 6 treatment groups and each have either three or four replicates (different Day's). When I look at the CuffNorm output, t ...
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