User: mvinas

gravatar for mvinas
mvinas10
Reputation:
10
Status:
New User
Location:
Last seen:
2 months, 2 weeks ago
Joined:
3 months ago
Email:
m*****@gwdg.de

Posts by mvinas

<prev • 5 results • page 1 of 1 • next >
1
vote
3
answers
202
views
3
answers
Comment: C: fastq.gz data - help for changes that impact upload (any source), history conten
... Many thanks Jen, I am "Grooming" each data first and then prepare the "dataset collection" and it worked. I did not have to uncompressed the .fastq.gz files and now TopHat analysis and next steps are faster than before. Maria ...
written 11 weeks ago by mvinas10
0
votes
3
answers
202
views
3
answers
Answer: A: fastq.gz data - help for changes that impact upload (any source), history conten
... Thank you Jen, In my case, FASTQ Groomer did not recognize *fastq.gz* data when is a "dataset collection", it recognizes only "single" *fastq.gz* data. So, I had to uncompress the data but, because is very large, TopHat is taking more than 2-3 days, Is this normal? Before was around 2-3 hours. Th ...
written 11 weeks ago by mvinas10
3
votes
3
answers
202
views
3
answers
fastq.gz data - help for changes that impact upload (any source), history contents, and tool usage
... Hello, I am downloading the data from SRA to Galaxy directly, but it seems Galaxy can not unzipped the files automatically. I did it many times before and it was working, but not now. There is another way how to unzipped the files? Thanks, Maria ...
fastq.gz fastqsanger datatype fastqsanger.gz fastq written 11 weeks ago by mvinas10
1
vote
1
answer
127
views
1
answer
htseq-count unknown error
... I am trying to use htseq-count tool for gene quantification, but I have this error: **"Fatal error: Unknown error occured: Error occured when processing GFF file (line 11 of file /galaxy repl/main/files/018/552/dataset_18552527.dat): Feature id1 does not contain a 'gene_id' attribute [Exception typ ...
rna-seq written 3 months ago by mvinas10
0
votes
1
answer
100
views
1
answer
TopHat input data
... Hello, I am trying to analyze ARN-seq, but when I use TopHat my data is not recognized and I can not include them in the analysis. Is it because they do not have "Sanger-scaled quality values with ASCII offset 33"?? or there is another option?. It says: "no fastqsanger dataset available". But data ...
fastqsanger input qa tools fastq written 3 months ago by mvinas10 • updated 3 months ago by Jennifer Hillman Jackson22k

Latest awards to mvinas

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 75 users visited in the last hour