User: mvinas

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mvinas10
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Posts by mvinas

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Comment: C: fastq.gz data - help for changes that impact upload (any source), history conten
... Many thanks Jen, I am "Grooming" each data first and then prepare the "dataset collection" and it worked. I did not have to uncompressed the .fastq.gz files and now TopHat analysis and next steps are faster than before. Maria ...
written 3 months ago by mvinas10
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Answer: A: fastq.gz data - help for changes that impact upload (any source), history conten
... Thank you Jen, In my case, FASTQ Groomer did not recognize *fastq.gz* data when is a "dataset collection", it recognizes only "single" *fastq.gz* data. So, I had to uncompress the data but, because is very large, TopHat is taking more than 2-3 days, Is this normal? Before was around 2-3 hours. Th ...
written 3 months ago by mvinas10
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fastq.gz data - help for changes that impact upload (any source), history contents, and tool usage
... Hello, I am downloading the data from SRA to Galaxy directly, but it seems Galaxy can not unzipped the files automatically. I did it many times before and it was working, but not now. There is another way how to unzipped the files? Thanks, Maria ...
fastq.gz fastqsanger datatype fastqsanger.gz fastq written 3 months ago by mvinas10
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htseq-count unknown error
... I am trying to use htseq-count tool for gene quantification, but I have this error: **"Fatal error: Unknown error occured: Error occured when processing GFF file (line 11 of file /galaxy repl/main/files/018/552/dataset_18552527.dat): Feature id1 does not contain a 'gene_id' attribute [Exception typ ...
rna-seq written 4 months ago by mvinas10
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TopHat input data
... Hello, I am trying to analyze ARN-seq, but when I use TopHat my data is not recognized and I can not include them in the analysis. Is it because they do not have "Sanger-scaled quality values with ASCII offset 33"?? or there is another option?. It says: "no fastqsanger dataset available". But data ...
fastqsanger input qa tools fastq written 4 months ago by mvinas10 • updated 4 months ago by Jennifer Hillman Jackson22k

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