User: Dannon Baker

gravatar for Dannon Baker
Dannon Baker270
Reputation:
270
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Location:
United States
Last seen:
2 years, 8 months ago
Joined:
4 years, 11 months ago
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Posts by Dannon Baker

<prev • 28 results • page 1 of 3 • next >
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Answer: A: ftp setup local server
... The FTP server won't be in the toolshed.  Here are some instructions that will hopefully get you started:  https://wiki.galaxyproject.org/Admin/Config/UploadviaFTP Let me know if you've tried to follow these and they didn't work for you.  Good luck! ...
written 2.8 years ago by Dannon Baker270
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Answer: A: Analyzing Bowtie result
... BAM is simply the binary (non-human-readable, compressed) version of SAM (which is plain text and human readable).  If you'd like to look at the actual file contents in text format in Galaxy, you'll need to convert this to SAM using one of the various convert tools.  See "BAM-to-SAM" and similar too ...
written 2.8 years ago by Dannon Baker270
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Comment: C: cummeRbund missing files
... We're working on getting the update to the main Galaxy server and this should resolve your issue.  I can update this question when that happens. ...
written 2.8 years ago by Dannon Baker270
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Answer: A: FTP files converion
... Can you provide a little more details on what you're trying to do?  I'm not familiar with an FTP datatype.  There's a fastq to fasta converter in the "Convert Formats" section of the tool panel, if that's what you meant. ...
written 2.8 years ago by Dannon Baker270
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Answer: A: Export datasets to a file in my computer
... If you click the little disk icon on any dataset (seen when the dataset is 'expanded' -- click the name of it to do so), your web browser should start downloading it to your local computer. ...
written 2.8 years ago by Dannon Baker270
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Answer: A: FTP upload painfully slow
... I've just verified that we aren't experiencing any connectivity issues and my upload speeds are fast.  The upload speeds you're seeing are most likely caused by a lack of bandwidth at the location you're connecting from -- are you able to try a different location? ...
written 2.8 years ago by Dannon Baker270
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Comment: C: Unsubscribe
... Scott, 1) Please create new threads when you have a new question, instead of replying to unrelated threads. 2) Have you tried the things Jen mentioned before? If so, please reply to the list (in that thread), with what issues you're having. Always "Reply All" to keep the list on the thread so th ...
written 3.8 years ago by Dannon Baker270
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Answer: A: Installing Tool In Galaxy On Cloud
... After adding yourself as an admin in Cloudman, your galaxy instance restarted, correct? If so, can you double check that the cloudman admin interface indicates your exact email address that you've logged into galaxy as? -Dannon ...
written 4.0 years ago by Dannon Baker270
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Answer: A: Importing Workflow From File Fails In Galaxy Instance On Amazon Cloud
... Sébastien, This seems to be a galaxy bug from a little while back. To fix your cloud instance, go to the cloud admin console and click "Update Galaxy", and the problem should be resolved once galaxy updates and restarts. -Dannon On Fri, Jan 3, 2014 at 6:42 PM, Sébastien Vigneau < ...
written 4.0 years ago by Dannon Baker270
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Answer: A: Grouping Histories Into Related Projects
... The right approach here is probably to use history tags (at the top of a history panel, click the tag icon just below the history name). You could tag several histories with a particular sample name, organism, etc. While you can *search* for histories by tags and get a list of, say, all "Mouse" tag ...
written 4.2 years ago by Dannon Baker270

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