User: machinelearner

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Posts by machinelearner

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Comment: C: Docker Galaxy submitting jobs to UGE
... Thanks for the reply! We are hesitant to do this because UGE is a license product and we don't want it in the container itself. ...
written 12 hours ago by machinelearner0
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Docker Galaxy submitting jobs to UGE
... Hi all, Has anyone been able to submit jobs on a Docker Galaxy instance to SGE or UGE on a centOS7 machine? After referring to https://github.com/bgruening/docker-galaxy-stable#Using-an-external-Grid-Engine-cluster we were still not able to have jobs passed on to UGE. Going into the container, we ...
uge docker galaxy written 15 hours ago by machinelearner0
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Answer: C: Cannot copy datasets from one history to another on local Galaxy
... This issue has resolved itself. Not sure how, as there was no restart or any changed made recently on our end. ...
written 8 weeks ago by machinelearner0
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Cannot copy datasets from one history to another on local Galaxy
... Hi all, We have a local instance of Galaxy installed but it is not able to be copy files from one history to another via the "copy datasets" option on the right tool bar. Is there a setting that has to be set so that this can occur, I have not found anything in the galaxy.ini file, but I could have ...
galaxy written 9 weeks ago by machinelearner0
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Comment: C: Concurrent Job Limits
... I haven't thought of that. I went back to check and my job scheduler (UGE) had a limit for resource usage which four jobs happen to entirely take up. Thanks! :) ...
written 9 weeks ago by machinelearner0
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Comment: C: Concurrent Job Limits
... Hi, Thanks for the reply! The path of the job conf file is correctly listed in the galaxy.ini file and everything was restarted after the changes. We are currently using the latest version of Galaxy and the tags in the sample xml file match the ones listed on the wiki. I saw this post:https://bios ...
written 9 weeks ago by machinelearner0
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Concurrent Job Limits
... Hi all, Is there a way to limit jobs being run on a local instance of Galaxy per individual user? I saw this page: https://galaxyproject.org/admin/config/jobs/ There is a mention of registered_user_concurrent_jobs option on the bottom for limiting jobs. Does this option limit jobs based on the use ...
galaxy written 10 weeks ago by machinelearner0
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Answer: A: Importing Histories from Local Galaxy Instances
... Hi Jen, This is really helpful. Having tried to import the tar file, the imported history does not show up. This showed up in the stdout of the error report: Error unpacking tar/gz archive: not a gzip file ', mode 'w' at 0x2aeb0b81a1c8> The file was able to be unzipped on the terminal via tar - ...
written 5 months ago by machinelearner0
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Importing Histories from Local Galaxy Instances
... Hi all, Is there a way to import user histories from one local instance of galaxy to another? For instance, if Galaxy1 and Galaxy2 are running locally on two different machines, would a user be able to download their history from Galaxy1 and then upload it to Galaxy2? There seems to be a import hi ...
import histories written 5 months ago by machinelearner0 • updated 5 months ago by Jennifer Hillman Jackson22k

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