User: SHAUN WEBB

gravatar for SHAUN WEBB
SHAUN WEBB70
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70
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6 days, 22 hours ago
Joined:
8 years, 1 month ago
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s*****@staffmail.ed.ac.uk

Posts by SHAUN WEBB

<prev • 14 results • page 1 of 2 • next >
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Answer: A: Canvas html output
... Thanks, that was an easy fix! ...
written 6 days ago by SHAUN WEBB70
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Canvas html output
... I have installed MEME from the Galaxy toolshed in my own instance, the tool appears to run fine but I am having trouble displaying the html output properly. It looks fine if I download the file and open in Chrome. I get an error saying "Your browser does not support canvas!", so I'm guessing I'm mis ...
galaxy canvas meme html written 6 days ago by SHAUN WEBB70
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No module named datetime error with gops tools
... I have installed the gops suite on my local Galaxy instance. When I run the tools I get the error below. Galaxy activates the virtualenv under .venv on startup and I can import the datetime module when running python through this virtualenv outside of Galaxy. Can't figure out why this is happening, ...
gops written 12 weeks ago by SHAUN WEBB70
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Comment: C: Galaxy update errors
... That seems to have worked nicely, thanks! ...
written 14 months ago by SHAUN WEBB70
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Comment: C: Galaxy update errors
... It's not a new instance, if I try that on my test server I get the following error: Traceback (most recent call last): File "/storage/home/galaxy/production/fresh/galaxy-dist/lib/galaxy/webapps/galaxy/api/datasets.py", line 66, in show rval = self._data( trans, dataset, **kwd ) ...
written 14 months ago by SHAUN WEBB70
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Comment: C: Galaxy update errors
... Yes sorry, I should have posted this, thanks for your help. 89.242.178.50 - - [05/Mar/2016:07:51:23 +0100] "GET /galaxy/api/datasets/5853e7ef34c5f57a?data_type=data&chrom=chr1&low=231796608&high=247249718&mode=Auto&resolution=193163.8421875&hda_ldda=hda&filter_cols=%5B%5 ...
written 14 months ago by SHAUN WEBB70
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Galaxy update errors
... I have recently updated Galaxy to the latest release and I am having a couple of issues. 1. When updating my mySQL database I got the following error: OperationalError: (_mysql_exceptions.OperationalError) (1059, "Identifier name 'workflow_invocation_to_subworkflow_invocation_association_ibfk_1' i ...
galaxy software error written 14 months ago by SHAUN WEBB70 • updated 14 months ago by Dannon Baker3.6k
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Answer: A: Re: Wrapper Question Prefix For Output Files.
... Hi Victor, this is how I have implemented this: Shaun Quoting VICTOR M RUOTTI wisc-mail on Thu, 23 Feb 2012 13:06:23 -0600: -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. ...
written 5.2 years ago by SHAUN WEBB70
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Answer: A: Pre-Processing Of Illumina Rna-Seq Paired End Data
... Hi Ravi, I got around this problem by using the fastq interlacer to join reads in to a single file, then use deinterlacer to output only reads that have a pair in the correct order. You may need to alter read IDs first by adding /1 and /2 to the end (see interlacer help text). I used unix command ...
written 5.3 years ago by SHAUN WEBB70
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Answer: A: Upload To Galaxy Via Ftp
... Great, works well. Will there be documentation on how to implement this on a local install? Shaun Quoting Nate Coraor : -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. ...
written 6.5 years ago by SHAUN WEBB70

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