User: lp.vandergouw

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Posts by lp.vandergouw

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connecting a local instance to another computer behind a proxy
... Good day, I am trying to setup a galaxy server behind a corporate firewall. We use a proxy to connect to the internet. To test galaxy, I first installed it on my laptop and tested it on my own LAN, where I could connect with a remote computer. What do I change to allow a connection behind a prox ...
galaxy written 9 months ago by lp.vandergouw10 • updated 9 months ago by mrals0
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Comment: C: NCBI BLAST+ on local Galaxy and associated .loc file entries
... from the NCBI BLAST readme: nr.*tar.gz | Non-redundant protein sequences from GenPept, Swissprot, PIR, PDF, PDB, and NCBI RefSeq nt.*tar.gz | Partially non-redundant nucleotide sequences from ...
written 12 months ago by lp.vandergouw10
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Comment: C: NCBI BLAST+ on local Galaxy and associated .loc file entries
... so for some reason my file won't change: neither via GUI nor via sudo chmod -R 777 /media/lucas/Verbatim_2TB/BLAST/nt the nr files have the same permissions as the nt files I decided to try and get my taxonomic profiles some other way, so I downloaden MetaPhlAn2 from the toolshed. However, sa ...
written 12 months ago by lp.vandergouw10
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Comment: C: NCBI BLAST+ on local Galaxy and associated .loc file entries
... Hi Jennefer, The indexes are all uncompressed, are all called nt.**.*** and the path given in the blastdb.loc file is the absolute path. The output of the command is as follows: total 42G drwx------ 1 lucas lucas 192K Nov 20 17:50 . drwx------ 1 lucas lucas 512K Nov 18 12:38 .. ...
written 12 months ago by lp.vandergouw10
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NCBI BLAST+ on local Galaxy and associated .loc file entries
... Hi, I recently downloaded a local instance of galaxy and added the NCBI BLAST+ tool from the toolshed. Now I downloaded both the nt and the nr databases from ftp://ftp.ncbi.nlm.nih.gov/blast/db/ but when installed, only the nr database shows up. The databases are intsalled as followed: nt(tab) ...
index local galaxy blast+ tool written 13 months ago by lp.vandergouw10 • updated 13 months ago by Jennifer Hillman Jackson23k

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