User: CF

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CF0
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Posts by CF

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Comment: C: Jobs don't run, workflows don't initiate
... No worries. I tried to set JAVA_OPTIONS using the job_conf.xml file, however this generates the same problem. ...
written 7 weeks ago by CF0
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Answer: A: Jobs don't run, workflows don't initiate
... Hi Martin, Unfortunately, I don't think that applies here, as I am using a local galaxy instance. I have narrowed the problem down somewhat though. Originally I had noticed that some of the Picard tools fail with an error suggesting I am running out of memory. So I increased the memory available ...
written 8 weeks ago by CF0
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Jobs don't run, workflows don't initiate
... Greetings, I have been using a local galaxy instance successfully for some time. However, suddenly galaxy will no longer run jobs. It will add them to the queue, but they never start running. Additionally, when I try to run workflows, it says they are successfully invoked, but it does not add th ...
galaxy software error written 8 weeks ago by CF0
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Cufflinks and inner mean distance
... Greetings, I am attempting to use Cufflinks on alignments produced by running Tophat on some paired-end data. When I try to set advanced Cufflinks options and change the inner mean distance to -20 (estimated previously using Bowtie and Picard, etc.), Cufflinks returns the following error: Fatal ...
cufflinks tuxedo options written 2.0 years ago by CF0 • updated 2.0 years ago by Jennifer Hillman Jackson25k

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