User: hamza_karakurt

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New User
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1 month, 1 week ago
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1 year, 1 month ago
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h*************@windowslive.com

Posts by hamza_karakurt

<prev • 5 results • page 1 of 1 • next >
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Finding gene names from TopHat results.
... Hello, I am trying a build a workflow for RNA-Seq analysis and I want to verify my methods via comparing a data set. The data sets I am trying to use are GSE56016 and GSE36537 from NCBI GEO. They have only one RNA-Seq result. I downloaded fasta from EBI SRA did analysis. I used TopHat and want to co ...
bam genenames bed tophat written 5 weeks ago by hamza_karakurt10 • updated 5 weeks ago by Jennifer Hillman Jackson23k
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Comment: C: Local Galaxy. Trimmomatic does not see fastq files.
... Here is the screenshot of my history. Files are in fastqsanger format. https://imgur.com/a/6HL3f ...
written 10 weeks ago by hamza_karakurt10
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Comment: C: Local Galaxy. Trimmomatic does not see fastq files.
... Data sets assigned as fastqsanger. I have no idea why I have this kind of error. Thank you for your interest. ...
written 10 weeks ago by hamza_karakurt10
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Local Galaxy. Trimmomatic does not see fastq files.
... Hello, I am new at Galaxy and trying to use it both local and in server. I downloaded some tools to local and tried to do an RNA-seq analysis. I tried to do this tutorial https://usegalaxy.org/u/jeremy/p/galaxy-rna-seq-analysis-exercise In Galaxy Server, It is working actually but when I try it on ...
trimming fastq quality trimmer fastq rna-seq written 10 weeks ago by hamza_karakurt10 • updated 10 weeks ago by zachary.gaber80
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About CHIP Seq Data Download
... Hello, I am a new learner in bioinformatics tools and want to learn how analyze chip seq data in Galaxy. I need to find a adipose stem cell chip seq data file (if there are any) but I have no idea where to find chip seq analysis results. Do you know any good databases? ...
chip-seq resources data written 13 months ago by hamza_karakurt10 • updated 13 months ago by Jennifer Hillman Jackson23k

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