User: julie dubois

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julie dubois20
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Posts by julie dubois

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Toolshed INstalled tool : Job submission Failed after upgrading galaxy local ins
... Hi, I've updated to the lastest commit. I'll report bug if it persist. Thanks Julie ...
written 10 weeks ago by julie dubois20
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Answer: A: Impossible to use Htseq-count on BAM files from Tophat2
... I'm not sure the "###" is normal but I think it's not the biggest problem for htseq. When you say "gene_id" in the option ID attribute, you say to htseq to search exactly this word (gene_id) in one of the column of gff3 file. So in your file there is no "gene_id" word. I don't know what is your gff ...
written 3 months ago by julie dubois20
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Answer: A: Toolshed INstalled tool : Job submission Failed after upgrading galaxy local ins
... Hi, THANKS a lot, it was the solution !!! The mystery is in the fact that not all tools installed with Toolshed are impacted. Thanks again. Julie ...
written 3 months ago by julie dubois20
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Answer: A: Impossible to use Htseq-count on BAM files from Tophat2
... Dear Thomas, The first error indicates that you have a problem on your gff3 file on line 40, htseq don't retrieve the gene_id and I suppose you want to count according gene_id. How is this line and is it different from other ? Did you correctly indicate the encoding of gene_id in the htseq formula ...
written 3 months ago by julie dubois20
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Toolshed INstalled tool : Job submission Failed after upgrading galaxy local instance
... Hi galaxy community I have been updated my local instance of galaxy to release 17.05. Since this update some tools previously installed from toolshed are not runnable : so I check the formular, fill it and click on execute and I have a red frame which appears with this message (for example bedtools ...
update galaxy shed tools error written 3 months ago by julie dubois20
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Import Files From Filesystem Path : No Redundance?
... Hi all, I have used the option "Import files from filesystem path" to import a complete arborescence of directories and files in one Data Library of Galaxy. Lot of files and sub-directories wil add to this arborescence. I've hoped import those changes in my data library with the option : add datase ...
galaxy written 5.1 years ago by julie dubois20 • updated 5.1 years ago by Nate Coraor3.1k

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