User: julie dubois

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julie dubois20
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4 months, 2 weeks ago
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5 years, 3 months ago
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Posts by julie dubois

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Toolshed INstalled tool : Job submission Failed after upgrading galaxy local ins
... Hi, I've updated to the lastest commit. I'll report bug if it persist. Thanks Julie ...
written 4 months ago by julie dubois20
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Answer: A: Impossible to use Htseq-count on BAM files from Tophat2
... I'm not sure the "###" is normal but I think it's not the biggest problem for htseq. When you say "gene_id" in the option ID attribute, you say to htseq to search exactly this word (gene_id) in one of the column of gff3 file. So in your file there is no "gene_id" word. I don't know what is your gff ...
written 5 months ago by julie dubois20
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Answer: A: Toolshed INstalled tool : Job submission Failed after upgrading galaxy local ins
... Hi, THANKS a lot, it was the solution !!! The mystery is in the fact that not all tools installed with Toolshed are impacted. Thanks again. Julie ...
written 5 months ago by julie dubois20
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Answer: A: Impossible to use Htseq-count on BAM files from Tophat2
... Dear Thomas, The first error indicates that you have a problem on your gff3 file on line 40, htseq don't retrieve the gene_id and I suppose you want to count according gene_id. How is this line and is it different from other ? Did you correctly indicate the encoding of gene_id in the htseq formula ...
written 5 months ago by julie dubois20
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Toolshed INstalled tool : Job submission Failed after upgrading galaxy local instance
... Hi galaxy community I have been updated my local instance of galaxy to release 17.05. Since this update some tools previously installed from toolshed are not runnable : so I check the formular, fill it and click on execute and I have a red frame which appears with this message (for example bedtools ...
update galaxy shed tools error written 5 months ago by julie dubois20
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Import Files From Filesystem Path : No Redundance?
... Hi all, I have used the option "Import files from filesystem path" to import a complete arborescence of directories and files in one Data Library of Galaxy. Lot of files and sub-directories wil add to this arborescence. I've hoped import those changes in my data library with the option : add datase ...
galaxy written 5.3 years ago by julie dubois20 • updated 5.3 years ago by Nate Coraor3.1k

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