User: chen.randy

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chen.randy110
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Posts by chen.randy

<prev • 5 results • page 1 of 1 • next >
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Answer: A: getting number of SNPs, insertion/deletion from VCF with VCFfilter
... use VCF Filter, input such as: -f "TYPE = del" to filter what you need ...
written 21 months ago by chen.randy110
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Answer: A: How to extract information from a VCF file
... use VCF Filter, input such as: -f "TYPE = del" to filter what you need ...
written 21 months ago by chen.randy110
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Answer: A: FASTAQ not able to be selected in BWA, though FastaQC passed
... Change the datatype of the uploaded FastQ sequence from "fastq" to "fastqsanger" directly. ...
written 21 months ago by chen.randy110
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Answer: A: How do I determine the correct filtering threshold in VCFfilter after running Fr
... “-f ‘QUAL > 40’” parameter will need to be used. A phred scale score of 40 equates to a 1 in 10,000 probability of a false positive call. ...
written 21 months ago by chen.randy110
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Answer: A: Problem in using uploaded files
... If you know the quality score is good for those FASTAQ, you could upload it by using the format "fastqsanger" initially, with the selected genome database (e.g. hg19). ...
written 21 months ago by chen.randy110

Latest awards to chen.randy

Teacher 21 months ago, created an answer with at least 3 up-votes. For A: How to extract information from a VCF file
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: FASTAQ not able to be selected in BWA, though FastaQC passed

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