User: annie.e.collier

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Posts by annie.e.collier

<prev • 7 results • page 1 of 1 • next >
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(Closed) Tophat not working?
... I have been trying to run Tophat for days. The jobs just keep sitting in the queue. I thought it was related to the system going down but it still won't run. Are there known issues? I have tried deleted and re-running the jobs on a variety of different files. ...
rna-seq software error alignment written 7 months ago by annie.e.collier20
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Finding Percent Totals in RNA-Seq
... Does anyone know how to sum and divide RNA-Seq datasets? I have two datasets (FPKM values) and want to find the percent total of all genes in each dataset (they are two fractions of a whole sample), so essentially I need to divide dataset 1 by the sum of dataset 1 and 2. I can't seem to find a strai ...
data-manipulation cuffdiff statistics rna-seq written 7 months ago by annie.e.collier20 • updated 7 months ago by Jennifer Hillman Jackson23k
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Comment: C: Local Galaxy help becoming an admin
... If I grep on galaxy.ini.sample for admin_users it says "admin_users = none." When following the instructions I listed above it created a new file for galaxy.ini in which my email is the admin. ...
written 14 months ago by annie.e.collier20
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Comment: C: Local Galaxy help becoming an admin
... I used git clone -b release_16.07 https://github.com/galaxyproject/galaxy.git to start galaxy When I grep on admin_users there are spaces as you mentioned. Email address is same I had used to register. ...
written 14 months ago by annie.e.collier20
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Comment: C: Cannot see "admin" on masthead
... Yes. I hit ctrl+c and then re ran galaxy using sh run.sh in the galaxy directory. Also tried restarting browser and logging in and out. ...
written 14 months ago by annie.e.collier20
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Comment: C: Cannot see "admin" on masthead
... Yes. I hit ctrl+c and then re ran galaxy using sh run.sh in the galaxy directory. Also tried restarting browser and logging in and out. ...
written 14 months ago by annie.e.collier20
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Local Galaxy help becoming an admin
... I followed the exact steps listed here: https://wiki.galaxyproject.org/Admin/GetGalaxy#Become_an_Admin:_Example in order to become a galaxy admin so that I could load someone else's tool for my own use. I see admin user=my email when I grep on admin user in config/galaxy.ini. However when I log on ...
local admin_users config admin galaxy.ini written 14 months ago by annie.e.collier20 • updated 14 months ago by Dannon Baker3.6k

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