User: souradeep.mis

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Posts by souradeep.mis

<prev • 12 results • page 1 of 2 • next >
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(Closed) Compute and correct GC bias
... Hello I am having a trouble running the compute GC bias on a BAM file aligned by BWA-MEM. The error showing is "This job was terminated because it ran longer than the maximum allowed job run time.". As because my reference genome has over 700K sequences, is it the source of problem. If it is then i ...
compute gc bias deeptools written 9 weeks ago by souradeep.mis40 • updated 9 weeks ago by Jennifer Hillman Jackson22k
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Error using Diamond
... I have trying to use Diamond in meta genomic analysis but unable to choose reference genome ...
diamond metagenimic_analysis written 10 weeks ago by souradeep.mis40
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Answer: A: Convert reference genome format fasta to 2bit (faToTwoBit)
... Thank you so much Devon. ...
written 12 weeks ago by souradeep.mis40
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Convert reference genome format fasta to 2bit (faToTwoBit)
... Can anybody please help me to know how to convert a .FASTA to .2bit format. Thank you. ...
.2bit genome format convert fasta written 12 weeks ago by souradeep.mis40
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Answer: A: Query about a running or onging job
... Thank you so much Jen. ...
written 3 months ago by souradeep.mis40
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Query about a running or onging job
... I have a doubt and it need to get clarified. The input data, In case of a successfully executed job, can they be deleted when the job is still running. Because i fear to delete one file and that is why i am getting a little bit memory problem. Any helpful reply is highly appreciated, Thank you. ...
galaxy jobs written 3 months ago by souradeep.mis40
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Answer: A: problem encoutered in FASTQ splitter !!
... Hello, Jennifer. The same problem occurred again when i gave the same job in fastq splitter, it ultimately got terminated after 48 hrs of run. My data was illumina sequenced, fastqsanger format and 7.7 gb. Do we have some altrernative, please do mention. Thank you. ...
written 4 months ago by souradeep.mis40
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Comment: C: splitter not working
... ok. hope this problem gets solved. Thank you. :) ...
written 5 months ago by souradeep.mis40
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Comment: C: splitter not working
... i want to assemble these files using trinity, if i give all my data as paired end , then trinity requires each end data separately, which i cant give without spitting. if i am wrong please correct me, and if there are any other options i can follow then please mention them so that i can get some alt ...
written 5 months ago by souradeep.mis40
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Comment: C: splitter not working
... thank you for your kind reply Sir. no my file is already in galaxy, but when i am giving my fastq files in FASTQSplitter , the splitter keep on rotating and ultimately gets terminated, and the error comes as "the program has run too long than expected". and my files are fastq files. so i think my p ...
written 5 months ago by souradeep.mis40

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