User: Diana Afonso

gravatar for Diana Afonso
Diana Afonso10
Reputation:
10
Status:
New User
Location:
Portugal/Braga/ICVS
Last seen:
1 year, 9 months ago
Joined:
1 year, 9 months ago
Email:
d**********@gmail.com

Posts by Diana Afonso

<prev • 3 results • page 1 of 1 • next >
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TopHat align summary
... Hello, I am using galaxy to analyze RNA seq of 100bp sing end data, sequenced with Illumina 2500. I started by uploading bam files and using the tool "Convert from BAM to FastQ" to convert my data into FastQ format. Next I used "FastQ groomer" to convert my data into one format that contains Sanger ...
rna-seq parameters alignment tophat fastq written 21 months ago by Diana Afonso10 • updated 21 months ago by Jennifer Hillman Jackson25k
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Tool Error "No space left on device"
... Hello, I am using FASTQ Groomer to convert my FASTQ files into one that contains Sanger-scaled quality values with ASCII offset 33 and the following error has been happening repeatedly. Since I am new at this I have no idea why this has been happening. Do you have any suggestions on how to solve th ...
server space usegalaxy.org cluster error written 21 months ago by Diana Afonso10 • updated 21 months ago by Jennifer Hillman Jackson25k
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TopHat alignment of RNA seq data
... Hello everyone, I want to use TopHat trough Galaxy to perform the alignment of single end RNA Seq data. I would like to know if usually you use the default settings or if you determine specific parameters according to the analysis you intend to do. Thank you. Diana Afonso ...
rna-seq parameters alignment tophat hiseq written 22 months ago by Diana Afonso10 • updated 21 months ago by Jennifer Hillman Jackson25k

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