User: jasonschultz

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jasonschultz10
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10
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New User
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Last seen:
7 months, 2 weeks ago
Joined:
8 months ago
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j***********@gmail.com

Posts by jasonschultz

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Create DBKey and Reference Genome
... Is the most recent release 16.07 or 15.10? I am running 15.10 now. I don't see hg38 in the build/dbkey list. Where is this list? I am using the data manager tool you mentioned, and hg38 is not populating. Is it possible that an older version of galaxy that I had and tried to remove is interfer ...
written 7 months ago by jasonschultz10
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Answer: A: HISAT Error Message
... It is in Galaxy, yes. It a local instance where I have been struggling to do an alignment. In my local instance, I do have several versions of samtools, because each tool requires a slightly different version. But they are all < 1.3: 1.2, 0.18, 0.19. I am missing something basic - the instal ...
written 7 months ago by jasonschultz10
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HISAT Errors on Local Galaxy due to dependency issues
... Hi, I am getting the following message when running HISAT2. Do you know what the problem might be? Fatal error: Exit code 1 () Usage: samtools sort [options...] [in.bam] Options: -l INT Set compression level, from 0 (uncompressed) to 9 (best) -m INT Set maximum memory per thread; suff ...
tool-shed local hisat tool admin written 7 months ago by jasonschultz10 • updated 7 months ago by Jennifer Hillman Jackson22k
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Create DBKey and Reference Genome
... Hello again, I am trying to load in hg38 into my local Galaxy instance. I am getting errors at the end, and I don't know why. I know the file downloads from UCSC, but it is the populating of the dbkey that I believe is the issue. However, I don't know what I am doing wrong. I chose the option ...
galaxy written 7 months ago by jasonschultz10
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Negative Disk Quota
... Hi. I see the following message when I look at my profile: You are using -23.3 GB of disk space in this Galaxy instance. Your disk quota is: 250.0 GB. Is your usage more than expected? See the documentation for tips on how to find all of the data in your account. I am not sure how I could be usin ...
quota recalculate usegalaxy.org account written 7 months ago by jasonschultz10 • updated 7 months ago by Jennifer Hillman Jackson22k

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