User: sophialovechan

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Posts by sophialovechan

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Comment: C: differential expression ballgown pData
... Thank you very much. ...
written 10 weeks ago by sophialovechan10
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differential expression ballgown pData
... Hi everyone, I am using ballgown to do differential gene expression analysis. But I have a question about the pData file. I am not sure what information should be included in phenotype files. I have four datasets, which are two replicates for two samples. Here is the phenotype files I generated. sam ...
rna-seq written 10 weeks ago by sophialovechan10 • updated 10 weeks ago by Jennifer Hillman Jackson23k
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Comment: C: Phenotype data for Ballgown tool
... Hi, may I ask a simple question related to this? What's the phenotype? I have two samples and two replicates for each sample. I am not sure what the phenotype is when I tried to generate pData. ...
written 10 weeks ago by sophialovechan10
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data orders in plotcorrelation
... Hi, I am using galaxy-deeptools to analyze my data. But when I used plot correlation to visualize the correlation of my different cells, I don't know how to arrange the order of my samples. How can I do that rather than automatically generating the order? Thanks. ...
galaxy written 12 months ago by sophialovechan10 • updated 12 months ago by Devon Ryan1.7k

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