Showing: vcfreset
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9
votes
3
answers
3.7k
views
6 follow
3
answers
getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 2.6 years ago by lorenasfe50 • updated 22 months ago by chen.randy110
4
votes
2
answers
1.5k
views
5 follow
2
answers
pileup to vcf
galaxy mpileup vcf pileup written 3.7 years ago by charles.wray20 • updated 4 months ago by Jennifer Hillman Jackson25k
2
votes
1
answer
1.7k
views
1
answer
Adding read group information in a bam header
bam vcf galaxy written 3.5 years ago by gkuffel22170 • updated 3.5 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
1.1k
views
1
answer
bcftools view will not read VCF file
input vcf software quirk bcf bfctools written 2.1 years ago by patterh20 • updated 2.1 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
463
views
1
answer
bam to VCF
bam vcf bowtie written 13 months ago by xlu120 • updated 13 months ago by Jennifer Hillman Jackson25k
1
vote
1
answer
1.2k
views
1
answer
Slice VCF not retaining INFO data
vcf snp written 3.9 years ago by Mark Crowe100 • updated 3.6 years ago by Jennifer Hillman Jackson25k
2
votes
2
answers
1.6k
views
2
answers
Problem opening IGV in Galaxy
galaxy vcf igv written 3.8 years ago by blur20
5
votes
4
answers
2.8k
views
8 follow
4
answers
1
vote
2
answers
1.7k
views
5 follow
2
answers
Annovar Annotate VCF tool - empty tabular file
annovar vcf written 3.2 years ago by Kostas10 • updated 2.1 years ago by marcocassone0
2
votes
2
answers
1.1k
views
2
answers
1
vote
0
answers
853
views
0
answers
1
vote
1
answer
777
views
1
answer
Cannot allocate vector
vcf memory dpc allocate written 2.8 years ago by navid.fr10 • updated 2.8 years ago by Jennifer Hillman Jackson25k
3
votes
2
answers
2.3k
views
2
answers
GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.6 years ago by nvlinh.dth10 • updated 2.6 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
578
views
5 follow
1
answer
can't get any VCF tools to work
vcf written 2.2 years ago by avoltz30 • updated 2.2 years ago by Martin Čech ♦♦ 4.9k
1
vote
1
answer
744
views
1
answer
ANNOVAR Annotation VCF empty
annovar vcf annotation rna-seq written 23 months ago by frankie.north10 • updated 23 months ago by Jennifer Hillman Jackson25k
1
vote
0
answers
604
views
0
answers
4
votes
1
answer
727
views
1
answer
1
vote
1
answer
281
views
1
answer
2
votes
1
answer
342
views
1
answer
2
votes
2
answers
258
views
2
answers
0
votes
1
answer
2.4k
views
1
answer
Bcf To Vcf
bcf vcf bcftools convert tool written 6.2 years ago by shamsher jagat590 • updated 6.2 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
3.6k
views
1
answer
1
vote
1
answer
1.3k
views
1
answer
BCFtools output tabular
samtools mpileup vcf usage tool written 4.0 years ago by fagrimal0 • updated 4.0 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
1.0k
views
1
answer
BCF to VCF
vcf bcftools tool bcf convert written 4.0 years ago by mltlbrt10 • updated 4.0 years ago by Jennifer Hillman Jackson25k
0
votes
3
answers
2.1k
views
3
answers
MAF in VCF file, where is it?
maf vcf af written 3.7 years ago by ginlucks10
0
votes
1
answer
962
views
1
answer
Gorilla VCF File
vcf gorilla written 3.6 years ago by kerna19920 • updated 3.6 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
1.0k
views
1
answer
Error VCF- VCFintersect
intersect vcf M fasta written 3.6 years ago by ginlucks10 • updated 3.6 years ago by Jennifer Hillman Jackson25k
0
votes
2
answers
1.1k
views
2
answers
Annovar not Running Annotation on VCF
usegalaxy.org vcf annovar job written 3.5 years ago by r_harripaul0 • updated 2.0 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
977
views
1
answer
How to classify the variants into different groups?
vcf written 3.3 years ago by mohamed_refaat.199210 • updated 3.3 years ago by Jennifer Hillman Jackson25k
1
vote
2
answers
2.3k
views
2
answers
obtaining SNP/SNVs from vcf or BAM files with galaxy?
bam snvs vcf snps galaxy written 3.2 years ago by kdevitofranceschi0 • updated 3.2 years ago by Jennifer Hillman Jackson25k
0
votes
0
answers
825
views
0
answers
1
vote
3
answers
1.6k
views
3
answers
0
votes
1
answer
892
views
1
answer
How to separate SNPs from other variant types in Galaxy?
galaxy vcf written 3.1 years ago by vladimir.gritsenko90 • updated 3.1 years ago by Bjoern Gruening5.1k
0
votes
1
answer
815
views
1
answer
0
votes
2
answers
2.1k
views
2
answers
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