Showing: vcfreset
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2
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1
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1.2k
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1
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Adding read group information in a bam header
bam vcf galaxy written 2.8 years ago by gkuffel22170 • updated 2.8 years ago by Jennifer Hillman Jackson23k
2
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1
answer
554
views
1
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bcftools view will not read VCF file
input vcf software quirk bcf bfctools written 16 months ago by patterh20 • updated 16 months ago by Jennifer Hillman Jackson23k
1
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1
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971
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1
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Slice VCF not retaining INFO data
vcf snp written 3.2 years ago by Mark Crowe100 • updated 2.8 years ago by Jennifer Hillman Jackson23k
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2
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1.2k
views
2
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Problem opening IGV in Galaxy
galaxy vcf igv written 3.0 years ago by blur20
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4
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1.9k
views
8 follow
4
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1
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2
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1.4k
views
5 follow
2
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Annovar Annotate VCF tool - empty tabular file
annovar vcf written 2.5 years ago by Kostas10 • updated 16 months ago by marcocassone0
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2
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762
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2
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1
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0
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652
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0
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1
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1
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538
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1
answer
Cannot allocate vector
vcf memory dpc allocate written 2.1 years ago by navid.fr10 • updated 2.0 years ago by Jennifer Hillman Jackson23k
3
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2
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1.4k
views
2
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 22 months ago by nvlinh.dth10 • updated 22 months ago by Jennifer Hillman Jackson23k
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3
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2.1k
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3
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getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 21 months ago by lorenasfe30 • updated 13 months ago by chen.randy110
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1
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351
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5 follow
1
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can't get any VCF tools to work
vcf written 17 months ago by avoltz30 • updated 17 months ago by Martin Čech ♦♦ 4.3k
1
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1
answer
434
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1
answer
ANNOVAR Annotation VCF empty
annovar vcf annotation rna-seq written 14 months ago by frankie.north10 • updated 14 months ago by Jennifer Hillman Jackson23k
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0
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326
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0
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4
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1
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341
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1
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0
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1
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1.6k
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1
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Bcf To Vcf
bcf vcf bcftools convert tool written 5.5 years ago by shamsher jagat590 • updated 5.5 years ago by Jennifer Hillman Jackson23k
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1
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3.1k
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1
answer
1
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1
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1.0k
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1
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BCFtools output tabular
samtools mpileup vcf usage tool written 3.2 years ago by fagrimal0 • updated 3.2 years ago by Jennifer Hillman Jackson23k
0
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1
answer
763
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1
answer
BCF to VCF
vcf bcftools tool bcf convert written 3.2 years ago by mltlbrt10 • updated 3.2 years ago by Jennifer Hillman Jackson23k
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3
answers
1.5k
views
3
answers
MAF in VCF file, where is it?
maf vcf af written 2.9 years ago by ginlucks10
0
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1
answer
782
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1
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Gorilla VCF File
vcf gorilla written 2.9 years ago by kerna19920 • updated 2.8 years ago by Jennifer Hillman Jackson23k
0
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1
answer
808
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1
answer
Error VCF- VCFintersect
intersect vcf M fasta written 2.9 years ago by ginlucks10 • updated 2.9 years ago by Jennifer Hillman Jackson23k
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2
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845
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2
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Annovar not Running Annotation on VCF
usegalaxy.org vcf annovar job written 2.7 years ago by r_harripaul0 • updated 15 months ago by Jennifer Hillman Jackson23k
0
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1
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754
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1
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How to classify the variants into different groups?
vcf written 2.5 years ago by mohamed_refaat.199210 • updated 2.5 years ago by Jennifer Hillman Jackson23k
1
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2
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1.8k
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obtaining SNP/SNVs from vcf or BAM files with galaxy?
bam snvs vcf snps galaxy written 2.5 years ago by kdevitofranceschi0 • updated 2.5 years ago by Jennifer Hillman Jackson23k
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0
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610
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0
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1
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3
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1.2k
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3
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0
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1
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686
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1
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How to separate SNPs from other variant types in Galaxy?
galaxy vcf written 2.3 years ago by vladimir.gritsenko90 • updated 2.3 years ago by Bjoern Gruening4.8k
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1
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582
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1
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0
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2
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1.6k
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2
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2
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6
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866
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6
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Filtering on tabular dataset from vcf
filter string vcf written 2.3 years ago by nbhassou10 • updated 2.2 years ago by judyh0
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2
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984
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2
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VCF gene name sorting
vcf gene name written 2.3 years ago by nbhassou10
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1
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2.3k
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1
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1
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1
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1.3k
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1
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0
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1
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557
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1
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Galaxy VCF Combine combines only to chr13
galaxy vcf combine written 2.1 years ago by stanedav0 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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