Showing: vcfreset
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9
votes
3
answers
3.0k
views
6 follow
3
answers
getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 2.3 years ago by lorenasfe50 • updated 19 months ago by chen.randy110
4
votes
2
answers
1.2k
views
5 follow
2
answers
pileup to vcf
galaxy mpileup vcf pileup written 3.5 years ago by charles.wray20 • updated 7 weeks ago by Jennifer Hillman Jackson25k
2
votes
1
answer
1.5k
views
1
answer
Adding read group information in a bam header
bam vcf galaxy written 3.3 years ago by gkuffel22170 • updated 3.3 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
823
views
1
answer
bcftools view will not read VCF file
input vcf software quirk bcf bfctools written 22 months ago by patterh20 • updated 22 months ago by Jennifer Hillman Jackson25k
2
votes
1
answer
348
views
1
answer
bam to VCF
bam vcf bowtie written 10 months ago by xlu120 • updated 10 months ago by Jennifer Hillman Jackson25k
1
vote
1
answer
1.1k
views
1
answer
Slice VCF not retaining INFO data
vcf snp written 3.7 years ago by Mark Crowe100 • updated 3.3 years ago by Jennifer Hillman Jackson25k
2
votes
2
answers
1.4k
views
2
answers
Problem opening IGV in Galaxy
galaxy vcf igv written 3.5 years ago by blur20
5
votes
4
answers
2.5k
views
8 follow
4
answers
1
vote
2
answers
1.6k
views
5 follow
2
answers
Annovar Annotate VCF tool - empty tabular file
annovar vcf written 3.0 years ago by Kostas10 • updated 21 months ago by marcocassone0
2
votes
2
answers
910
views
2
answers
1
vote
0
answers
777
views
0
answers
1
vote
1
answer
681
views
1
answer
Cannot allocate vector
vcf memory dpc allocate written 2.5 years ago by navid.fr10 • updated 2.5 years ago by Jennifer Hillman Jackson25k
3
votes
2
answers
1.9k
views
2
answers
GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.4 years ago by nvlinh.dth10 • updated 2.4 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
454
views
5 follow
1
answer
can't get any VCF tools to work
vcf written 23 months ago by avoltz30 • updated 23 months ago by Martin Čech ♦♦ 4.7k
1
vote
1
answer
647
views
1
answer
ANNOVAR Annotation VCF empty
annovar vcf annotation rna-seq written 20 months ago by frankie.north10 • updated 20 months ago by Jennifer Hillman Jackson25k
1
vote
0
answers
493
views
0
answers
4
votes
1
answer
572
views
1
answer
1
vote
1
answer
178
views
1
answer
2
votes
1
answer
226
views
1
answer
2
votes
2
answers
154
views
2
answers
0
votes
1
answer
2.0k
views
1
answer
Bcf To Vcf
bcf vcf bcftools convert tool written 6.0 years ago by shamsher jagat590 • updated 5.9 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
3.4k
views
1
answer
1
vote
1
answer
1.2k
views
1
answer
BCFtools output tabular
samtools mpileup vcf usage tool written 3.7 years ago by fagrimal0 • updated 3.7 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
926
views
1
answer
BCF to VCF
vcf bcftools tool bcf convert written 3.7 years ago by mltlbrt10 • updated 3.7 years ago by Jennifer Hillman Jackson25k
0
votes
3
answers
1.9k
views
3
answers
MAF in VCF file, where is it?
maf vcf af written 3.4 years ago by ginlucks10
0
votes
1
answer
887
views
1
answer
Gorilla VCF File
vcf gorilla written 3.4 years ago by kerna19920 • updated 3.3 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
929
views
1
answer
Error VCF- VCFintersect
intersect vcf M fasta written 3.4 years ago by ginlucks10 • updated 3.4 years ago by Jennifer Hillman Jackson25k
0
votes
2
answers
962
views
2
answers
Annovar not Running Annotation on VCF
usegalaxy.org vcf annovar job written 3.2 years ago by r_harripaul0 • updated 21 months ago by Jennifer Hillman Jackson25k
0
votes
1
answer
873
views
1
answer
How to classify the variants into different groups?
vcf written 3.0 years ago by mohamed_refaat.199210 • updated 3.0 years ago by Jennifer Hillman Jackson25k
1
vote
2
answers
2.0k
views
2
answers
obtaining SNP/SNVs from vcf or BAM files with galaxy?
bam snvs vcf snps galaxy written 3.0 years ago by kdevitofranceschi0 • updated 3.0 years ago by Jennifer Hillman Jackson25k
0
votes
0
answers
748
views
0
answers
1
vote
3
answers
1.4k
views
3
answers
0
votes
1
answer
801
views
1
answer
How to separate SNPs from other variant types in Galaxy?
galaxy vcf written 2.8 years ago by vladimir.gritsenko90 • updated 2.8 years ago by Bjoern Gruening5.1k
0
votes
1
answer
731
views
1
answer
0
votes
2
answers
1.9k
views
2
answers
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