Showing: vcfreset
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getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 2.0 years ago by lorenasfe30 • updated 16 months ago by chen.randy110
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obtaining SNP/SNVs from vcf or BAM files with galaxy?
bam snvs vcf snps galaxy written 2.7 years ago by kdevitofranceschi0 • updated 2.7 years ago by Jennifer Hillman Jackson24k
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Bcf To Vcf
bcf vcf bcftools convert tool written 5.7 years ago by shamsher jagat590 • updated 5.7 years ago by Jennifer Hillman Jackson24k
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MAF in VCF file, where is it?
maf vcf af written 3.1 years ago by ginlucks10
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.1 years ago by nvlinh.dth10 • updated 2.1 years ago by Jennifer Hillman Jackson24k
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Annovar Annotate VCF tool - empty tabular file
annovar vcf written 2.7 years ago by Kostas10 • updated 18 months ago by marcocassone0
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Adding read group information in a bam header
bam vcf galaxy written 3.0 years ago by gkuffel22170 • updated 3.0 years ago by Jennifer Hillman Jackson24k
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Problem opening IGV in Galaxy
galaxy vcf igv written 3.3 years ago by blur20
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BCFtools output tabular
samtools mpileup vcf usage tool written 3.5 years ago by fagrimal0 • updated 3.5 years ago by Jennifer Hillman Jackson24k
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VCF output from Mpileup tool
vcf mpileup galaxy igv pileup written 22 months ago by felipe_o_torquato10 • updated 22 months ago by Jennifer Hillman Jackson24k
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VCF gene name sorting
vcf gene name written 2.5 years ago by nbhassou10
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Slice VCF not retaining INFO data
vcf snp written 3.4 years ago by Mark Crowe100 • updated 3.1 years ago by Jennifer Hillman Jackson24k
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Filtering on tabular dataset from vcf
filter string vcf written 2.5 years ago by nbhassou10 • updated 2.5 years ago by judyh0
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How to combine genotypes into one VCF file?
vcf genotypes vcfcombine written 20 months ago by avoltz30 • updated 20 months ago by Jennifer Hillman Jackson24k
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Annovar not Running Annotation on VCF
usegalaxy.org vcf annovar job written 3.0 years ago by r_harripaul0 • updated 18 months ago by Jennifer Hillman Jackson24k
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Error VCF- VCFintersect
intersect vcf M fasta written 3.1 years ago by ginlucks10 • updated 3.1 years ago by Jennifer Hillman Jackson24k
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Subtract one VCF file from another VCF file
vcf snp written 17 months ago by ambi199930 • updated 17 months ago by Jennifer Hillman Jackson24k
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BCF to VCF
vcf bcftools tool bcf convert written 3.5 years ago by mltlbrt10 • updated 3.5 years ago by Jennifer Hillman Jackson24k
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Gorilla VCF File
vcf gorilla written 3.1 years ago by kerna19920 • updated 3.1 years ago by Jennifer Hillman Jackson24k
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How to classify the variants into different groups?
vcf written 2.8 years ago by mohamed_refaat.199210 • updated 2.8 years ago by Jennifer Hillman Jackson24k
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How to separate SNPs from other variant types in Galaxy?
galaxy vcf written 2.6 years ago by vladimir.gritsenko90 • updated 2.6 years ago by Bjoern Gruening5.0k
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bcftools view will not read VCF file
input vcf software quirk bcf bfctools written 19 months ago by patterh20 • updated 19 months ago by Jennifer Hillman Jackson24k
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Filtering using BED file
filtering mpileup vcf bed file written 21 months ago by errityf0 • updated 21 months ago by Devon Ryan1.9k
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