Showing: vcfreset
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getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 2.2 years ago by lorenasfe50 • updated 18 months ago by chen.randy110
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pileup to vcf
galaxy mpileup vcf pileup written 3.4 years ago by charles.wray20 • updated 26 days ago by Jennifer Hillman Jackson25k
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Annovar Annotate VCF tool - empty tabular file
annovar vcf written 2.9 years ago by Kostas10 • updated 21 months ago by marcocassone0
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5 follow
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can't get any VCF tools to work
vcf written 23 months ago by avoltz30 • updated 23 months ago by Martin Čech ♦♦ 4.7k
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Filtering on tabular dataset from vcf
filter string vcf written 2.7 years ago by nbhassou10 • updated 2.7 years ago by judyh0
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Cannot allocate vector
vcf memory dpc allocate written 2.5 years ago by navid.fr10 • updated 2.5 years ago by Jennifer Hillman Jackson25k
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bcftools view will not read VCF file
input vcf software quirk bcf bfctools written 21 months ago by patterh20 • updated 21 months ago by Jennifer Hillman Jackson25k
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ANNOVAR Annotation VCF empty
annovar vcf annotation rna-seq written 19 months ago by frankie.north10 • updated 19 months ago by Jennifer Hillman Jackson25k
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bam to VCF
bam vcf bowtie written 9 months ago by xlu120 • updated 9 months ago by Jennifer Hillman Jackson25k
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Bcf To Vcf
bcf vcf bcftools convert tool written 5.9 years ago by shamsher jagat590 • updated 5.9 years ago by Jennifer Hillman Jackson25k
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BCF to VCF
vcf bcftools tool bcf convert written 3.7 years ago by mltlbrt10 • updated 3.7 years ago by Jennifer Hillman Jackson25k
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Problem opening IGV in Galaxy
galaxy vcf igv written 3.5 years ago by blur20
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Annovar not Running Annotation on VCF
usegalaxy.org vcf annovar job written 3.2 years ago by r_harripaul0 • updated 20 months ago by Jennifer Hillman Jackson25k
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obtaining SNP/SNVs from vcf or BAM files with galaxy?
bam snvs vcf snps galaxy written 2.9 years ago by kdevitofranceschi0 • updated 2.9 years ago by Jennifer Hillman Jackson25k
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How to separate SNPs from other variant types in Galaxy?
galaxy vcf written 2.8 years ago by vladimir.gritsenko90 • updated 2.8 years ago by Bjoern Gruening5.0k
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.3 years ago by nvlinh.dth10 • updated 2.3 years ago by Jennifer Hillman Jackson25k
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0
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Filtering using BED file
filtering mpileup vcf bed file written 24 months ago by errityf0 • updated 23 months ago by Devon Ryan1.9k
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Prinicipal Component Analysis-1kgp
bcftools 1kgp vcf pca snp written 9 months ago by ambika4950 • updated 9 months ago by bvh0
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Spliting a VCF for some genotypes
galaxy vcf written 7 months ago by umermehar1010
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Split VCF file
galaxy split vcf format written 11 weeks ago by elainelewis10 • updated 11 weeks ago by Jennifer Hillman Jackson25k
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BCFtools output tabular
samtools mpileup vcf usage tool written 3.7 years ago by fagrimal0 • updated 3.7 years ago by Jennifer Hillman Jackson25k
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