Showing: vcfreset
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5
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8 follow
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Annovar Annotate VCF tool - empty tabular file
annovar vcf written 2.5 years ago by Kostas10 • updated 15 months ago by marcocassone0
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1
answer
345
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5 follow
1
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can't get any VCF tools to work
vcf written 17 months ago by avoltz30 • updated 17 months ago by Martin Čech ♦♦ 4.3k
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3
answers
2.1k
views
3
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getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 21 months ago by lorenasfe30 • updated 13 months ago by chen.randy110
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1
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331
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1
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2
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755
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0
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648
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0
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2
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6
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862
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6
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Filtering on tabular dataset from vcf
filter string vcf written 2.2 years ago by nbhassou10 • updated 2.2 years ago by judyh0
1
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1
answer
534
views
1
answer
Cannot allocate vector
vcf memory dpc allocate written 2.0 years ago by navid.fr10 • updated 2.0 years ago by Jennifer Hillman Jackson23k
2
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1
answer
548
views
1
answer
bcftools view will not read VCF file
input vcf software quirk bcf bfctools written 16 months ago by patterh20 • updated 16 months ago by Jennifer Hillman Jackson23k
1
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1
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427
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1
answer
ANNOVAR Annotation VCF empty
annovar vcf annotation rna-seq written 14 months ago by frankie.north10 • updated 14 months ago by Jennifer Hillman Jackson23k
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0
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322
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0
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0
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1
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1.6k
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Bcf To Vcf
bcf vcf bcftools convert tool written 5.4 years ago by shamsher jagat590 • updated 5.4 years ago by Jennifer Hillman Jackson23k
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1
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759
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1
answer
BCF to VCF
vcf bcftools tool bcf convert written 3.2 years ago by mltlbrt10 • updated 3.2 years ago by Jennifer Hillman Jackson23k
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2
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1.2k
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2
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Problem opening IGV in Galaxy
galaxy vcf igv written 3.0 years ago by blur20
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2
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840
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2
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Annovar not Running Annotation on VCF
usegalaxy.org vcf annovar job written 2.7 years ago by r_harripaul0 • updated 15 months ago by Jennifer Hillman Jackson23k
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obtaining SNP/SNVs from vcf or BAM files with galaxy?
bam snvs vcf snps galaxy written 2.5 years ago by kdevitofranceschi0 • updated 2.5 years ago by Jennifer Hillman Jackson23k
0
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1
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683
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1
answer
How to separate SNPs from other variant types in Galaxy?
galaxy vcf written 2.3 years ago by vladimir.gritsenko90 • updated 2.3 years ago by Bjoern Gruening4.8k
3
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2
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1.4k
views
2
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 22 months ago by nvlinh.dth10 • updated 22 months ago by Jennifer Hillman Jackson23k
2
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1
answer
737
views
1
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0
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1
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535
views
1
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Filtering using BED file
filtering mpileup vcf bed file written 18 months ago by errityf0 • updated 18 months ago by Devon Ryan1.9k
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594
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2
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0
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213
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1
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363
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2
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0
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1
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115
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1
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Prinicipal Component Analysis-1kgp
bcftools 1kgp vcf pca snp written 4 months ago by ambika4950 • updated 4 months ago by bvh0
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2
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102
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0
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1
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3.1k
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1
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1
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BCFtools output tabular
samtools mpileup vcf usage tool written 3.2 years ago by fagrimal0 • updated 3.2 years ago by Jennifer Hillman Jackson23k
1
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1
answer
965
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1
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Slice VCF not retaining INFO data
vcf snp written 3.2 years ago by Mark Crowe100 • updated 2.8 years ago by Jennifer Hillman Jackson23k
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3
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1.5k
views
3
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MAF in VCF file, where is it?
maf vcf af written 2.9 years ago by ginlucks10
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1
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779
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1
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Gorilla VCF File
vcf gorilla written 2.9 years ago by kerna19920 • updated 2.8 years ago by Jennifer Hillman Jackson23k
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1
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801
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1
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Error VCF- VCFintersect
intersect vcf M fasta written 2.9 years ago by ginlucks10 • updated 2.8 years ago by Jennifer Hillman Jackson23k
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1
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1.2k
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1
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Adding read group information in a bam header
bam vcf galaxy written 2.8 years ago by gkuffel22170 • updated 2.8 years ago by Jennifer Hillman Jackson23k
0
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1
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748
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1
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How to classify the variants into different groups?
vcf written 2.5 years ago by mohamed_refaat.199210 • updated 2.5 years ago by Jennifer Hillman Jackson23k
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0
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606
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