Showing: vcfreset
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5
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8 follow
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getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 2.5 years ago by lorenasfe50 • updated 21 months ago by chen.randy110
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2
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1.4k
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5 follow
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pileup to vcf
galaxy mpileup vcf pileup written 3.6 years ago by charles.wray20 • updated 3 months ago by Jennifer Hillman Jackson25k
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5 follow
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Annovar Annotate VCF tool - empty tabular file
annovar vcf written 3.1 years ago by Kostas10 • updated 24 months ago by marcocassone0
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1
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513
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5 follow
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can't get any VCF tools to work
vcf written 2.1 years ago by avoltz30 • updated 2.1 years ago by Martin Čech ♦♦ 4.8k
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300
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0
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824
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0
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2
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6
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1.1k
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6
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Filtering on tabular dataset from vcf
filter string vcf written 2.9 years ago by nbhassou10 • updated 2.9 years ago by judyh0
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1
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744
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1
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Cannot allocate vector
vcf memory dpc allocate written 2.7 years ago by navid.fr10 • updated 2.7 years ago by Jennifer Hillman Jackson25k
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1
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1
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bcftools view will not read VCF file
input vcf software quirk bcf bfctools written 24 months ago by patterh20 • updated 24 months ago by Jennifer Hillman Jackson25k
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1
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710
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1
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ANNOVAR Annotation VCF empty
annovar vcf annotation rna-seq written 22 months ago by frankie.north10 • updated 22 months ago by Jennifer Hillman Jackson25k
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0
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565
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0
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2
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1
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422
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bam to VCF
bam vcf bowtie written 12 months ago by xlu120 • updated 12 months ago by Jennifer Hillman Jackson25k
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241
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1
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1
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208
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0
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1
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2.3k
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1
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Bcf To Vcf
bcf vcf bcftools convert tool written 6.1 years ago by shamsher jagat590 • updated 6.1 years ago by Jennifer Hillman Jackson25k
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1
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982
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1
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BCF to VCF
vcf bcftools tool bcf convert written 3.9 years ago by mltlbrt10 • updated 3.9 years ago by Jennifer Hillman Jackson25k
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2
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1.5k
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2
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Problem opening IGV in Galaxy
galaxy vcf igv written 3.7 years ago by blur20
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2
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1.0k
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2
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Annovar not Running Annotation on VCF
usegalaxy.org vcf annovar job written 3.4 years ago by r_harripaul0 • updated 23 months ago by Jennifer Hillman Jackson25k
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obtaining SNP/SNVs from vcf or BAM files with galaxy?
bam snvs vcf snps galaxy written 3.1 years ago by kdevitofranceschi0 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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1
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850
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How to separate SNPs from other variant types in Galaxy?
galaxy vcf written 3.0 years ago by vladimir.gritsenko90 • updated 3.0 years ago by Bjoern Gruening5.1k
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.5 years ago by nvlinh.dth10 • updated 2.5 years ago by Jennifer Hillman Jackson25k
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1
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1.1k
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1
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0
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1
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958
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1
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Filtering using BED file
filtering mpileup vcf bed file written 2.2 years ago by errityf0 • updated 2.2 years ago by Devon Ryan1.9k
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0
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396
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691
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1
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607
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0
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1
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315
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1
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Prinicipal Component Analysis-1kgp
bcftools 1kgp vcf pca snp written 12 months ago by ambika4950 • updated 12 months ago by bvh0
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371
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Spliting a VCF for some genotypes
galaxy vcf written 10 months ago by umermehar1010
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1
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286
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Split VCF file
galaxy split vcf format written 5 months ago by elainelewis10 • updated 5 months ago by Jennifer Hillman Jackson25k
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1
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3.6k
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1
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