Showing: vcfreset
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How can I index a file with tabix?
freebayes galaxy gatk vcf variant written 8 days ago by eennadi0 • updated 8 days ago by Jennifer Hillman Jackson23k
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FreeBayes returning an empty table
freebayes bam vcf variant galaxy written 20 days ago by annet.kyomuhangi10 • updated 20 days ago by Jennifer Hillman Jackson23k
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Chromosome names and position names in VCF file
vcf written 8 weeks ago by umermehar1010 • updated 8 weeks ago by Jennifer Hillman Jackson23k
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VCF break create multi tool
galaxy split vcf vcftools sample written 3 months ago by madihaamin0 • updated 5 weeks ago by Jennifer Hillman Jackson23k
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Prinicipal Component Analysis-1kgp
bcftools 1kgp vcf pca snp written 4 months ago by ambika4950 • updated 4 months ago by bvh0
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bam to VCF
bam vcf bowtie written 4 months ago by xlu10 • updated 4 months ago by Jennifer Hillman Jackson23k
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181
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Dataset format conversion from fastq to bam and vcf
bam dataset vcf convert fastq written 4 months ago by gvacinova0 • updated 4 months ago by Jennifer Hillman Jackson23k
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Question about FreeBayes output
freebayes galaxy vcf variant sra written 6 months ago by sv670 • updated 6 months ago by Jennifer Hillman Jackson23k
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How to debug VT normalize on the Galaxy cloud instance?
cloud vt vcf amazon vttools written 10 months ago by msprindzhuk40 • updated 10 months ago by Jennifer Hillman Jackson23k
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Subtract one VCF file from another VCF file
vcf snp written 14 months ago by ambi199920 • updated 14 months ago by Jennifer Hillman Jackson23k
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ANNOVAR Annotation VCF empty
annovar vcf annotation rna-seq written 14 months ago by frankie.north10 • updated 14 months ago by Jennifer Hillman Jackson23k
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bcftools view will not read VCF file
input vcf software quirk bcf bfctools written 16 months ago by patterh20 • updated 16 months ago by Jennifer Hillman Jackson23k
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VCF filter only allow one option of filtering
filter vcf vcf-tools vcf-filter multiple written 17 months ago by tqtran990 • updated 17 months ago by Jennifer Hillman Jackson23k
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How to combine genotypes into one VCF file?
vcf genotypes vcfcombine written 17 months ago by avoltz30 • updated 17 months ago by Jennifer Hillman Jackson23k
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can't get any VCF tools to work
vcf written 17 months ago by avoltz30 • updated 17 months ago by Martin Čech ♦♦ 4.3k
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Filtering using BED file
filtering mpileup vcf bed file written 18 months ago by errityf0 • updated 18 months ago by Devon Ryan1.9k
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VCF output from Mpileup tool
vcf mpileup galaxy igv pileup written 19 months ago by felipe_o_torquato10 • updated 19 months ago by Jennifer Hillman Jackson23k
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getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 21 months ago by lorenasfe30 • updated 13 months ago by chen.randy110
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 22 months ago by nvlinh.dth10 • updated 22 months ago by Jennifer Hillman Jackson23k
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