Showing: vcfreset
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2
votes
6
answers
1.2k
views
6
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Filtering on tabular dataset from vcf
filter string vcf written 3.0 years ago by nbhassou10 • updated 3.0 years ago by judyh0
5
votes
4
answers
2.8k
views
8 follow
4
answers
0
votes
3
answers
2.1k
views
3
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MAF in VCF file, where is it?
maf vcf af written 3.6 years ago by ginlucks10
1
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3
answers
1.6k
views
3
answers
9
votes
3
answers
3.7k
views
6 follow
3
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getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 2.5 years ago by lorenasfe50 • updated 22 months ago by chen.randy110
2
votes
2
answers
1.6k
views
2
answers
Problem opening IGV in Galaxy
galaxy vcf igv written 3.8 years ago by blur20
4
votes
2
answers
1.5k
views
5 follow
2
answers
pileup to vcf
galaxy mpileup vcf pileup written 3.7 years ago by charles.wray20 • updated 4 months ago by Jennifer Hillman Jackson25k
0
votes
2
answers
1.0k
views
2
answers
Annovar not Running Annotation on VCF
usegalaxy.org vcf annovar job written 3.5 years ago by r_harripaul0 • updated 2.0 years ago by Jennifer Hillman Jackson25k
1
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2
answers
1.7k
views
5 follow
2
answers
Annovar Annotate VCF tool - empty tabular file
annovar vcf written 3.2 years ago by Kostas10 • updated 2.1 years ago by marcocassone0
1
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2
answers
2.3k
views
2
answers
obtaining SNP/SNVs from vcf or BAM files with galaxy?
bam snvs vcf snps galaxy written 3.2 years ago by kdevitofranceschi0 • updated 3.2 years ago by Jennifer Hillman Jackson25k
2
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2
answers
1.1k
views
2
answers
0
votes
2
answers
2.1k
views
2
answers
0
votes
2
answers
1.2k
views
2
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VCF gene name sorting
vcf gene name written 3.0 years ago by nbhassou10
3
votes
2
answers
2.2k
views
2
answers
GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.6 years ago by nvlinh.dth10 • updated 2.6 years ago by Jennifer Hillman Jackson25k
1
vote
2
answers
1.5k
views
2
answers
VCF output from Mpileup tool
vcf mpileup galaxy igv pileup written 2.3 years ago by felipe_o_torquato10 • updated 2.3 years ago by Jennifer Hillman Jackson25k
4
votes
2
answers
1.1k
views
2
answers
1
vote
2
answers
666
views
2
answers
1
vote
2
answers
410
views
2
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Spliting a VCF for some genotypes
galaxy vcf written 11 months ago by umermehar1010
2
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2
answers
248
views
2
answers
0
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2
answers
262
views
2
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0
votes
2
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359
views
2
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0
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2
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198
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2
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0
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2
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201
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2
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0
votes
2
answers
112
views
2
answers
0
votes
1
answer
2.4k
views
1
answer
Bcf To Vcf
bcf vcf bcftools convert tool written 6.2 years ago by shamsher jagat590 • updated 6.2 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
3.6k
views
1
answer
1
vote
1
answer
1.3k
views
1
answer
BCFtools output tabular
samtools mpileup vcf usage tool written 4.0 years ago by fagrimal0 • updated 4.0 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
1.0k
views
1
answer
BCF to VCF
vcf bcftools tool bcf convert written 4.0 years ago by mltlbrt10 • updated 4.0 years ago by Jennifer Hillman Jackson25k
1
vote
1
answer
1.2k
views
1
answer
Slice VCF not retaining INFO data
vcf snp written 3.9 years ago by Mark Crowe100 • updated 3.6 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
961
views
1
answer
Gorilla VCF File
vcf gorilla written 3.6 years ago by kerna19920 • updated 3.6 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
1.0k
views
1
answer
Error VCF- VCFintersect
intersect vcf M fasta written 3.6 years ago by ginlucks10 • updated 3.6 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
1.7k
views
1
answer
Adding read group information in a bam header
bam vcf galaxy written 3.5 years ago by gkuffel22170 • updated 3.5 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
971
views
1
answer
How to classify the variants into different groups?
vcf written 3.3 years ago by mohamed_refaat.199210 • updated 3.3 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
881
views
1
answer
How to separate SNPs from other variant types in Galaxy?
galaxy vcf written 3.1 years ago by vladimir.gritsenko90 • updated 3.1 years ago by Bjoern Gruening5.1k
0
votes
1
answer
808
views
1
answer
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