Showing: vcfreset
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How to debug VT normalize on the Galaxy cloud instance?
cloud vt vcf amazon vttools written 15 months ago by msprindzhuk50 • updated 15 months ago by Jennifer Hillman Jackson25k
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getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 2.2 years ago by lorenasfe50 • updated 18 months ago by chen.randy110
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Subtract one VCF file from another VCF file
vcf snp written 19 months ago by ambi199930 • updated 19 months ago by Jennifer Hillman Jackson25k
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ANNOVAR Annotation VCF empty
annovar vcf annotation rna-seq written 19 months ago by frankie.north10 • updated 19 months ago by Jennifer Hillman Jackson25k
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Annovar not Running Annotation on VCF
usegalaxy.org vcf annovar job written 3.2 years ago by r_harripaul0 • updated 20 months ago by Jennifer Hillman Jackson25k
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Annovar Annotate VCF tool - empty tabular file
annovar vcf written 2.9 years ago by Kostas10 • updated 21 months ago by marcocassone0
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bcftools view will not read VCF file
input vcf software quirk bcf bfctools written 21 months ago by patterh20 • updated 21 months ago by Jennifer Hillman Jackson25k
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VCF filter only allow one option of filtering
filter vcf vcf-tools vcf-filter multiple written 22 months ago by tqtran990 • updated 22 months ago by Jennifer Hillman Jackson25k
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How to combine genotypes into one VCF file?
vcf genotypes vcfcombine written 22 months ago by avoltz30 • updated 22 months ago by Jennifer Hillman Jackson25k
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can't get any VCF tools to work
vcf written 23 months ago by avoltz30 • updated 23 months ago by Martin Čech ♦♦ 4.7k
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Filtering using BED file
filtering mpileup vcf bed file written 24 months ago by errityf0 • updated 23 months ago by Devon Ryan1.9k
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VCF output from Mpileup tool
vcf mpileup galaxy igv pileup written 24 months ago by felipe_o_torquato10 • updated 24 months ago by Jennifer Hillman Jackson25k
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.3 years ago by nvlinh.dth10 • updated 2.3 years ago by Jennifer Hillman Jackson25k
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Cannot allocate vector
vcf memory dpc allocate written 2.5 years ago by navid.fr10 • updated 2.5 years ago by Jennifer Hillman Jackson25k
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Galaxy VCF Combine combines only to chr13
galaxy vcf combine written 2.5 years ago by stanedav0 • updated 2.5 years ago by Jennifer Hillman Jackson25k
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Filtering on tabular dataset from vcf
filter string vcf written 2.7 years ago by nbhassou10 • updated 2.7 years ago by judyh0
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VCF gene name sorting
vcf gene name written 2.7 years ago by nbhassou10
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How to separate SNPs from other variant types in Galaxy?
galaxy vcf written 2.8 years ago by vladimir.gritsenko90 • updated 2.8 years ago by Bjoern Gruening5.0k
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