Showing: variantreset
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.5 years ago by nvlinh.dth10 • updated 2.5 years ago by Jennifer Hillman Jackson25k
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FreeBayes returning an empty table
freebayes bam vcf variant galaxy written 9 months ago by annet.kyomuhangi10 • updated 9 months ago by Jennifer Hillman Jackson25k
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fastQC results of WGS data
wgs gatk fastqc data quality variant written 8 months ago by 153244562970 • updated 8 months ago by Jennifer Hillman Jackson25k
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How can I index a file with tabix?
freebayes galaxy gatk vcf variant written 8 months ago by eennadi0 • updated 8 months ago by Jennifer Hillman Jackson25k
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FASTQ quality trimmer
tutorials qa galaxy variant written 7 months ago by some0 • updated 7 months ago by Jennifer Hillman Jackson25k
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multiple data SnpEff variant effect and annotation
snpeff annotation snp variant written 7 months ago by ninakmrajala10 • updated 7 months ago by Jennifer Hillman Jackson25k
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Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 5 months ago by Daphnis0 • updated 5 months ago by Jennifer Hillman Jackson25k
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Zygosity of mutations
variant annovar snp gemini genotype written 5 months ago by joshigaurav000710 • updated 5 months ago by Jennifer Hillman Jackson25k
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Analysis SNP table
R rna-seq snp variant written 4 months ago by anasofiamoreira9410 • updated 4 months ago by Jennifer Hillman Jackson25k
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Sample Order in MPileup
collection dataset mpileup variant sample written 15 days ago by hilary.a.edgington0 • updated 15 days ago by Jennifer Hillman Jackson25k
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cDNA sequencing data analysis
galaxy variant cdna written 8 days ago by joshigaurav000710 • updated 7 days ago by Jennifer Hillman Jackson25k
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HOW TO REALIGN INDELS
bam realign indel variant galaxy written 4 days ago by julieta0 • updated 4 days ago by Jennifer Hillman Jackson25k
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Question about FreeBayes output
freebayes galaxy vcf variant sra written 15 months ago by sv670 • updated 15 months ago by Jennifer Hillman Jackson25k
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SNP data for population structure analysis
pca snp variant written 7 months ago by lmunfai0 • updated 7 months ago by Jennifer Hillman Jackson25k
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Error in MiModD variant caling
mimodd galaxy variant input error written 7 weeks ago by 5mu0 • updated 7 weeks ago by Jennifer Hillman Jackson25k
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