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Stacks on usegalaxy

rad-seq usegalaxy.eu usegalaxy.org stacks written 11 weeks ago by mlemieux • 0 • updated 11 weeks ago by Jennifer Hillman Jackson ♦ 25k

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Varscan unable to compare somatic with germline samples

usegalaxy.eu cancer varscan variant somatic written 3 months ago by a.januszewski • 10 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k

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Recent Replies

C: Galaxy installation fail by dexter.myrick • 10
Thanks again for your help. I tried the command kill -9 uwgsi and it doesn't work. It returned th...
C: Galaxy installation fail by Martin Čech ♦♦ 4.7k
That warning is fine, safe to ignore. As of the stuck process that happens to me from time to t...
C: Galaxy installation fail by Jennifer Hillman Jackson ♦ 25k
Maybe just try killing the process directly? To start over?
C: Galaxy installation fail by dexter.myrick • 10
Thanks! This worked. However, I did encounter another problem. After I closed galaxy, uWGSI conti...
A: Problem with data analysis in Galaxy Pipeline (very urgent) by Jennifer Hillman Jackson ♦ 25k
Hello, There were some problems with Tophat earlier and those are likely corrected by now (post ...
A: mapping tools error: "Remote job server indicated a problem running or monitorin by Jennifer Hillman Jackson ♦ 25k
Hello, Please try again now. There were some server issues during this time frame. If that job...
C: RSEM/Trinity NOT WORKING 'path' problem by Jennifer Hillman Jackson ♦ 25k
What version of Galaxy are you running (and local or docker?), when did you last check for point ...
A: My history just got wiped out! by Jennifer Hillman Jackson ♦ 25k
Hello, Please see the FAQ here: https://galaxyproject.org/support/#account - My history is mis...
A: Research on RNA SEQ by Jennifer Hillman Jackson ♦ 25k
Hello, There is a known problem with the metadata assignment when importing data from this sourc...
A: Erorr with runing cuffmerge by Jennifer Hillman Jackson ♦ 25k
Hello, This error indicates that the reference annotation GFF3 input has duplicated IDs. Most to...
A: Galaxy installation fail by Martin Čech ♦♦ 4.7k
quickfix: if you are on 18.05 or newer run this from your galaxy folder `./.venv/bin/pip uninstal...
A: SnpEff database build tool for C.elegans by Jennifer Hillman Jackson ♦ 25k
Hello, Skip these two preparation tools - they are known to be problematic right now. Instead,...

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