Showing: tophatreset
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7
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4.8k
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5 follow
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3
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0
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1.1k
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3
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300
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6 follow
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GALAXY_SLOTS and slashes
tophat multi-processor multi-core rna-seq written 10 months ago by apozhitkov60 • updated 10 months ago by Jennifer Hillman Jackson24k
8
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2
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8.5k
views
5 follow
2
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Tophat2 align_summary interpretation
multiple alignment align_summary tophat written 3.8 years ago by Delong, Zhou140 • updated 3.8 years ago by wukai1990100
2
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0
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678
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6 follow
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2
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1
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2.4k
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1
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Minimum Length Of Read Segments
tophat rna-seq written 5.7 years ago by Du, Jianguang370 • updated 5.7 years ago by Jennifer Hillman Jackson24k
2
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2
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849
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2
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type of file for reference genome
tophat written 3.9 years ago by namratakumari10 • updated 11 months ago by westcott10
1
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1
answer
3.0k
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1
answer
1
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1
answer
1.3k
views
1
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Running TopHat locally
local tophat rna-seq written 3.8 years ago by Suzanne Gomes120
2
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1
answer
1.5k
views
1
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SpeedUp Tophat2 (segment_juncs only runs single core)
tophat written 3.8 years ago by bimbam4210 • updated 3.7 years ago by Jennifer Hillman Jackson24k
3
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2
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1.4k
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2
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2
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1
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4.0k
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5 follow
1
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Building Bowtie index, failed
rna-seq alignment tophat gff written 3.3 years ago by jingshuowang10 • updated 3.3 years ago by Bjoern Gruening5.0k
3
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1
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1.1k
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1
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2
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1
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616
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1
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adding tophat2 to galaxy
tophat tophat2 main written 3.1 years ago by dashi.dixit10 • updated 3.1 years ago by Jennifer Hillman Jackson24k
2
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1
answer
770
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1
answer
3
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2
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978
views
5 follow
2
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Tophat run wont work
alignment tophat written 3.0 years ago by michimaurin20 • updated 2.9 years ago by Martin Čech ♦♦ 4.5k
4
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1
answer
2.1k
views
1
answer
Multiple FASTQ files per replicate
galaxy alignment tophat rna-seq written 2.9 years ago by nashedm10 • updated 2.9 years ago by Jennifer Hillman Jackson24k
1
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0
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963
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0
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1
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2
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626
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2
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tophat running since 4 days
4 days tophat written 2.8 years ago by ajmaninisha30
1
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0
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640
views
0
answers
Error for TopHat
software error tophat rna-seq written 2.5 years ago by ahmetcingoz10 • updated 2.5 years ago by Jennifer Hillman Jackson24k
1
vote
2
answers
714
views
2
answers
Error running tophat2
galaxy software error tophat written 2.2 years ago by nelger10 • updated 18 months ago by deane30
2
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1
answer
1.2k
views
1
answer
1
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1
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501
views
1
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TopHat Error After Updating Galaxy
tophat written 2.0 years ago by irinadominova10 • updated 2.0 years ago by Jennifer Hillman Jackson24k
1
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2
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628
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2
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TopHat not working
tophat written 24 months ago by tran_tim10
1
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2
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545
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2
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1
vote
1
answer
659
views
1
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Unable to finish job for both RNA-STAR and tophat2
samtools galaxy config admin tophat written 24 months ago by chaoyuan80 • updated 24 months ago by Jennifer Hillman Jackson24k
1
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1
answer
1.1k
views
1
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Tophat2 index problem
tophat rna-seq written 24 months ago by yasser.morsy10
1
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1
answer
394
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1
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Galaxy Stuck On TopHat for more than 3 hours
galaxy tophat written 24 months ago by Claudine.daou10 • updated 24 months ago by Jennifer Hillman Jackson24k
1
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1
answer
809
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1
answer
1
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0
answers
516
views
0
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intron retention analysis
galaxy tophat written 23 months ago by kuick7710
1
vote
1
answer
587
views
1
answer
Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 20 months ago by darsha_710 • updated 20 months ago by Jennifer Hillman Jackson24k
2
votes
2
answers
970
views
2
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TopHat - set metadata manually or retry auto-detection
tophat rna-seq written 20 months ago by avoltz30 • updated 5 months ago by Wanderer10
2
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0
answers
668
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0
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the meaning of tophat alignment summary
tophat written 20 months ago by yutao10
3
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2
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671
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2
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TopHat alignment of RNA seq data
rna-seq parameters alignment tophat hiseq written 19 months ago by Diana Afonso10 • updated 19 months ago by Jennifer Hillman Jackson24k
3
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2
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1.8k
views
2
answers
gff to gtf conversion
rna-seq gtf tophat gff written 17 months ago by computationalvarun20 • updated 11 months ago by Guy Reeves1.0k
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