Showing: tophatreset
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5 follow
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Tophat2 align_summary interpretation
multiple alignment align_summary tophat written 3.6 years ago by Delong, Zhou140 • updated 3.5 years ago by wukai1990100
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2
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7.4k
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2
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About Mapping Quality
tophat rna-seq written 6.0 years ago by Li, Jilong (MU-Student)80 • updated 5.9 years ago by Kevin Silverstein20
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1
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4.6k
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5 follow
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2
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1
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3.8k
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5 follow
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Building Bowtie index, failed
rna-seq alignment tophat gff written 3.0 years ago by jingshuowang10 • updated 3.0 years ago by Bjoern Gruening4.8k
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2.9k
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1
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0
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1
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2.4k
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1
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2
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1
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2.3k
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1
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Tophat: Samtools not found (but dependencies are installed)
bam samtools galaxy tophat rna-seq written 3.7 years ago by daniel.heredia0 • updated 3.6 years ago by y.hoogstrate450
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1
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2.3k
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1
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TopHat: Error: Couldn't build bowtie index with err = 1
fasta rnaseq tophat written 2.5 years ago by madkisson30 • updated 2.5 years ago by Jennifer Hillman Jackson23k
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1
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2.3k
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1
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Minimum Length Of Read Segments
tophat rna-seq written 5.4 years ago by Du, Jianguang370 • updated 5.4 years ago by Jennifer Hillman Jackson23k
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1
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2.1k
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1
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0
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1
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1.9k
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1
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Combining Reads from 2 Lanes
bam samtools galaxy tophat rna-seq written 2.6 years ago by nashedm10 • updated 2.6 years ago by Philipe Moncuquet40
4
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1
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1.9k
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1
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Multiple FASTQ files per replicate
galaxy alignment tophat rna-seq written 2.7 years ago by nashedm10 • updated 2.7 years ago by Jennifer Hillman Jackson23k
1
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2
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1.9k
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2
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0
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1
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1.8k
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1
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Unmapped Reads From Tophat
tophat rna-seq written 5.2 years ago by Kevin Y10 • updated 5.2 years ago by Ido M. Tamir280
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1
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Can I Convert Paired-End Datasets Into Single End Ones?
tophat rna-seq written 5.4 years ago by Du, Jianguang370 • updated 5.4 years ago by Jennifer Hillman Jackson23k
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1
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1.7k
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1
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Error Setting BAM Metadata
bam samtools galaxy alignment tophat written 3.4 years ago by changk160 • updated 3.4 years ago by Bjoern Gruening4.8k
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3
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1.7k
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3
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Tophat mismatches for whole read vs segments
tophat rna-seq written 3.6 years ago by Suzanne Gomes120 • updated 3.6 years ago by Jennifer Hillman Jackson23k
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4
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1.6k
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4
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Run Tophat In Galaxy
tophat rna-seq written 6.4 years ago by Peng, Tao170
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1
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1.5k
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1
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Tophat Paired End Read
tophat rna-seq written 5.8 years ago by 杨继文210 • updated 5.8 years ago by Jennifer Hillman Jackson23k
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1.5k
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1
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0
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2
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1.5k
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2
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0
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1
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1.5k
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1
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error long spanning reads Malformed
galaxy alignment tophat rna-seq written 3.4 years ago by xabierelcoro0 • updated 3.4 years ago by Jennifer Hillman Jackson23k
2
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1
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1.4k
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1
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SpeedUp Tophat2 (segment_juncs only runs single core)
tophat written 3.5 years ago by bimbam4210 • updated 3.5 years ago by Jennifer Hillman Jackson23k
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1
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1.4k
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1
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Number Of Mismatches Allowed In The Initial Read Mapping
tophat rna-seq written 5.4 years ago by Du, Jianguang370 • updated 5.4 years ago by Jennifer Hillman Jackson23k
1
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1
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1.3k
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Running TopHat2 with a GTF file
rnaseq tophat written 2.8 years ago by gkuffel22170 • updated 2.8 years ago by Jennifer Hillman Jackson23k
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2
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1.3k
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2
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0
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1
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1.3k
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1
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tophat multi read alignment
tophat tool written 3.7 years ago by jaganlakshman10 • updated 3.7 years ago by Jennifer Hillman Jackson23k
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1.3k
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4
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0
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1
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1.2k
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quality score length differs from sequence length
alignment tophat rna-seq written 2.8 years ago by eloise.greenland0 • updated 2.8 years ago by Jennifer Hillman Jackson23k
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1
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1.2k
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1
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Mm9 Reference Gtf File For Cuffcompare
tophat rna-seq written 6.3 years ago by shamsher jagat590 • updated 6.3 years ago by Lozach, Jean20
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1.2k
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1
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Running TopHat locally
local tophat rna-seq written 3.5 years ago by Suzanne Gomes120
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1.2k
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1
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0
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1
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1.2k
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1
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0
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1
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1.2k
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1
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Need help with "FastQC:Read QC" tool
cufflinks fastqc:read-qc tophat rna-seq written 3.0 years ago by jianwang0 • updated 3.0 years ago by Jennifer Hillman Jackson23k
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