Showing: tophatreset
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2
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4
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11k
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4
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8
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2
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9.4k
views
5 follow
2
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Tophat2 align_summary interpretation
multiple alignment align_summary tophat written 4.3 years ago by Delong, Zhou140 • updated 4.3 years ago by wukai1990100
0
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2
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9.0k
views
2
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About Mapping Quality
tophat rna-seq written 6.7 years ago by Li, Jilong (MU-Student)80 • updated 6.7 years ago by Kevin Silverstein20
7
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1
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5.1k
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5 follow
1
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0
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1
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4.3k
views
1
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2
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1
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4.2k
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5 follow
1
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Building Bowtie index, failed
rna-seq alignment tophat gff written 3.8 years ago by jingshuowang10 • updated 3.8 years ago by Bjoern Gruening5.1k
3
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2
answers
3.4k
views
2
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gff to gtf conversion
rna-seq gtf tophat gff written 23 months ago by computationalvarun20 • updated 17 months ago by Guy Reeves1.0k
1
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1
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3.2k
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1
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0
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1
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3.0k
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1
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TopHat: Error: Couldn't build bowtie index with err = 1
fasta rnaseq tophat written 3.2 years ago by madkisson30 • updated 3.2 years ago by Jennifer Hillman Jackson25k
4
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1
answer
2.7k
views
1
answer
Multiple FASTQ files per replicate
galaxy alignment tophat rna-seq written 3.4 years ago by nashedm10 • updated 3.4 years ago by Jennifer Hillman Jackson25k
0
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1
answer
2.7k
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1
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Combining Reads from 2 Lanes
bam samtools galaxy tophat rna-seq written 3.4 years ago by nashedm10 • updated 3.4 years ago by Philipe Moncuquet40
2
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1
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2.7k
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1
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Tophat: Samtools not found (but dependencies are installed)
bam samtools galaxy tophat rna-seq written 4.4 years ago by daniel.heredia0 • updated 4.4 years ago by y.hoogstrate460
2
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1
answer
2.6k
views
1
answer
Minimum Length Of Read Segments
tophat rna-seq written 6.2 years ago by Du, Jianguang380 • updated 6.2 years ago by Jennifer Hillman Jackson25k
1
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2
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2.4k
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2
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0
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1
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2.4k
views
1
answer
1
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1
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2.3k
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1
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Tophat vs HISAT
cufflinks tophat rna-seq written 17 months ago by Beatriz Ramos10 • updated 17 months ago by Jennifer Hillman Jackson25k
1
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1
answer
2.2k
views
1
answer
Can I Convert Paired-End Datasets Into Single End Ones?
tophat rna-seq written 6.2 years ago by Du, Jianguang380 • updated 6.2 years ago by Jennifer Hillman Jackson25k
9
votes
6
answers
2.1k
views
7 follow
6
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TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 16 months ago by johanvn10 • updated 16 months ago by franklin_moreno0
0
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2
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2.1k
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2
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0
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1
answer
2.0k
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1
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Unmapped Reads From Tophat
tophat rna-seq written 5.9 years ago by Kevin Y10 • updated 5.9 years ago by Ido M. Tamir280
2
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1
answer
1.9k
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1
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Error Setting BAM Metadata
bam samtools galaxy alignment tophat written 4.1 years ago by changk160 • updated 4.1 years ago by Bjoern Gruening5.1k
0
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3
answers
1.9k
views
3
answers
Tophat mismatches for whole read vs segments
tophat rna-seq written 4.4 years ago by Suzanne Gomes120 • updated 4.4 years ago by Jennifer Hillman Jackson25k
0
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2
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1.9k
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2
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0
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4
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1.9k
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4
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Run Tophat In Galaxy
tophat rna-seq written 7.2 years ago by Peng, Tao170
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1
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1.8k
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1
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3
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2
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1.8k
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2
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Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat path written 2.0 years ago by deane30 • updated 9 months ago by yusheng_tan0
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1
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1.8k
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1
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Tophat Paired End Read
tophat rna-seq written 6.5 years ago by 杨继文210 • updated 6.5 years ago by Jennifer Hillman Jackson25k
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2
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1.8k
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2
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0
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1
answer
1.8k
views
1
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quality score length differs from sequence length
alignment tophat rna-seq written 3.5 years ago by eloise.greenland0 • updated 3.5 years ago by Jennifer Hillman Jackson25k
0
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1
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1.7k
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1
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error long spanning reads Malformed
galaxy alignment tophat rna-seq written 4.1 years ago by xabierelcoro0 • updated 4.1 years ago by Jennifer Hillman Jackson25k
2
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1
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1.7k
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1
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SpeedUp Tophat2 (segment_juncs only runs single core)
tophat written 4.3 years ago by bimbam4210 • updated 4.3 years ago by Jennifer Hillman Jackson25k
2
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5
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1.7k
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5
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1
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2
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1.7k
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2
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0
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1
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1.7k
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1
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Number Of Mismatches Allowed In The Initial Read Mapping
tophat rna-seq written 6.1 years ago by Du, Jianguang380 • updated 6.1 years ago by Jennifer Hillman Jackson25k
0
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5
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1.7k
views
5
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