Showing: tophatreset
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2
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4
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9.6k
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4
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8
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2
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8.5k
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5 follow
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Tophat2 align_summary interpretation
multiple alignment align_summary tophat written 3.9 years ago by Delong, Zhou140 • updated 3.8 years ago by wukai1990100
0
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2
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7.9k
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2
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About Mapping Quality
tophat rna-seq written 6.2 years ago by Li, Jilong (MU-Student)80 • updated 6.2 years ago by Kevin Silverstein20
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1
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4.8k
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5 follow
1
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2
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1
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4.0k
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5 follow
1
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Building Bowtie index, failed
rna-seq alignment tophat gff written 3.3 years ago by jingshuowang10 • updated 3.3 years ago by Bjoern Gruening5.0k
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1
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3.1k
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1
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1
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1
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3.0k
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1
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0
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1
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2.5k
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1
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TopHat: Error: Couldn't build bowtie index with err = 1
fasta rnaseq tophat written 2.8 years ago by madkisson30 • updated 2.7 years ago by Jennifer Hillman Jackson24k
2
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1
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2.4k
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1
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Tophat: Samtools not found (but dependencies are installed)
bam samtools galaxy tophat rna-seq written 3.9 years ago by daniel.heredia0 • updated 3.9 years ago by y.hoogstrate460
2
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1
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2.4k
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1
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Minimum Length Of Read Segments
tophat rna-seq written 5.7 years ago by Du, Jianguang370 • updated 5.7 years ago by Jennifer Hillman Jackson24k
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1
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2.2k
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1
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0
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1
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2.1k
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1
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Combining Reads from 2 Lanes
bam samtools galaxy tophat rna-seq written 2.9 years ago by nashedm10 • updated 2.9 years ago by Philipe Moncuquet40
4
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1
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2.1k
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1
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Multiple FASTQ files per replicate
galaxy alignment tophat rna-seq written 2.9 years ago by nashedm10 • updated 2.9 years ago by Jennifer Hillman Jackson24k
1
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2
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2.1k
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2
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0
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1
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1.9k
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1
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Can I Convert Paired-End Datasets Into Single End Ones?
tophat rna-seq written 5.7 years ago by Du, Jianguang370 • updated 5.7 years ago by Jennifer Hillman Jackson24k
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1
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1.9k
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1
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Unmapped Reads From Tophat
tophat rna-seq written 5.4 years ago by Kevin Y10 • updated 5.4 years ago by Ido M. Tamir280
3
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2
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1.8k
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2
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gff to gtf conversion
rna-seq gtf tophat gff written 17 months ago by computationalvarun20 • updated 11 months ago by Guy Reeves1.0k
2
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1
answer
1.8k
views
1
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Error Setting BAM Metadata
bam samtools galaxy alignment tophat written 3.7 years ago by changk160 • updated 3.7 years ago by Bjoern Gruening5.0k
0
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3
answers
1.8k
views
3
answers
Tophat mismatches for whole read vs segments
tophat rna-seq written 3.9 years ago by Suzanne Gomes120 • updated 3.9 years ago by Jennifer Hillman Jackson24k
0
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4
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1.6k
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4
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Run Tophat In Galaxy
tophat rna-seq written 6.7 years ago by Peng, Tao170
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1
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1.6k
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1
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0
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1
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1.6k
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1
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Tophat Paired End Read
tophat rna-seq written 6.0 years ago by 杨继文210 • updated 6.0 years ago by Jennifer Hillman Jackson24k
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2
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1.6k
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2
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0
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1
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1.6k
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1
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error long spanning reads Malformed
galaxy alignment tophat rna-seq written 3.6 years ago by xabierelcoro0 • updated 3.6 years ago by Jennifer Hillman Jackson24k
2
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1
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1.5k
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1
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SpeedUp Tophat2 (segment_juncs only runs single core)
tophat written 3.8 years ago by bimbam4210 • updated 3.8 years ago by Jennifer Hillman Jackson24k
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1
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1.5k
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1
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Number Of Mismatches Allowed In The Initial Read Mapping
tophat rna-seq written 5.6 years ago by Du, Jianguang370 • updated 5.6 years ago by Jennifer Hillman Jackson24k
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1
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1.4k
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1
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quality score length differs from sequence length
alignment tophat rna-seq written 3.0 years ago by eloise.greenland0 • updated 3.0 years ago by Jennifer Hillman Jackson24k
9
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6
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1.4k
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7 follow
6
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TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 11 months ago by johanvn10 • updated 10 months ago by franklin_moreno0
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1
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1.4k
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1
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Running TopHat2 with a GTF file
rnaseq tophat written 3.0 years ago by gkuffel22170 • updated 3.0 years ago by Jennifer Hillman Jackson24k
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1
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1.4k
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1
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tophat multi read alignment
tophat tool written 4.0 years ago by jaganlakshman10 • updated 4.0 years ago by Jennifer Hillman Jackson24k
3
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2
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1.4k
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2
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2
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1
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1.4k
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1
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1
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4
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1.3k
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4
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3
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2
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1.3k
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2
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Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat path written 18 months ago by deane30 • updated 3 months ago by yusheng_tan0
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1
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1.3k
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1
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Tophat vs HISAT
cufflinks tophat rna-seq written 11 months ago by Beatriz Ramos10 • updated 11 months ago by Jennifer Hillman Jackson24k
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