Showing: tophatreset
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9
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6
answers
1.1k
views
7 follow
6
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TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 7 months ago by johanvn10 • updated 7 months ago by franklin_moreno0
2
votes
0
answers
576
views
6 follow
0
answers
7
votes
1
answer
4.6k
views
5 follow
1
answer
8
votes
2
answers
8.1k
views
5 follow
2
answers
Tophat2 align_summary interpretation
multiple alignment align_summary tophat written 3.6 years ago by Delong, Zhou140 • updated 3.5 years ago by wukai1990100
2
votes
1
answer
3.8k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 3.0 years ago by jingshuowang10 • updated 3.0 years ago by Bjoern Gruening4.8k
3
votes
2
answers
928
views
5 follow
2
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Tophat run wont work
alignment tophat written 2.7 years ago by michimaurin20 • updated 2.7 years ago by Martin Čech ♦♦ 4.3k
1
vote
1
answer
1.2k
views
1
answer
Running TopHat locally
local tophat rna-seq written 3.5 years ago by Suzanne Gomes120
1
vote
2
answers
571
views
2
answers
tophat running since 4 days
4 days tophat written 2.6 years ago by ajmaninisha30
1
vote
2
answers
647
views
2
answers
Error running tophat2
galaxy software error tophat written 23 months ago by nelger10 • updated 15 months ago by deane30
2
votes
1
answer
563
views
1
answer
TopHat Build in genomes
galaxy alignment tophat rna-seq written 21 months ago by newyasso0 • updated 21 months ago by christophe.habib340
1
vote
1
answer
482
views
1
answer
Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 17 months ago by darsha_710 • updated 17 months ago by Jennifer Hillman Jackson23k
2
votes
2
answers
839
views
2
answers
TopHat - set metadata manually or retry auto-detection
tophat rna-seq written 17 months ago by avoltz30 • updated 8 weeks ago by Wanderer10
2
votes
0
answers
562
views
0
answers
the meaning of tophat alignment summary
tophat written 17 months ago by yutao10
1
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2
answers
340
views
2
answers
Using filtered data for TopHat
tophat usegalaxy.org main tool error written 13 months ago by kuk220 • updated 13 months ago by Jennifer Hillman Jackson23k
0
votes
1
answer
265
views
1
answer
2
votes
0
answers
232
views
0
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GALAXY_SLOTS and slashes
tophat multi-processor multi-core rna-seq written 7 months ago by apozhitkov50 • updated 7 months ago by Jennifer Hillman Jackson23k
0
votes
2
answers
961
views
2
answers
Cloudman - Galaxy - TopHat2 error
cloudman tophat written 3.7 years ago by mg165520 • updated 3.7 years ago by Dannon Baker3.7k
2
votes
2
answers
786
views
2
answers
type of file for reference genome
tophat written 3.7 years ago by namratakumari10 • updated 7 months ago by westcott10
2
votes
1
answer
2.3k
views
1
answer
Tophat: Samtools not found (but dependencies are installed)
bam samtools galaxy tophat rna-seq written 3.6 years ago by daniel.heredia0 • updated 3.6 years ago by y.hoogstrate450
1
vote
1
answer
2.9k
views
1
answer
1
vote
2
answers
906
views
2
answers
Tophat for Illumina disappeared!
tophat rna-seq written 2.8 years ago by pig51080 • updated 2.8 years ago by Martin Čech ♦♦ 4.3k
4
votes
1
answer
1.9k
views
1
answer
Multiple FASTQ files per replicate
galaxy alignment tophat rna-seq written 2.6 years ago by nashedm10 • updated 2.6 years ago by Jennifer Hillman Jackson23k
1
vote
2
answers
571
views
2
answers
Galaxy jobs starting and then returning to grey and not running...
galaxy tophat written 2.6 years ago by jonathanneve890 • updated 2.6 years ago by ramyak19120
0
votes
2
answers
682
views
2
answers
TOPHAT ERROR tool execution
tool execution tophat written 2.4 years ago by s.good0 • updated 2.3 years ago by ajmaninisha30
2
votes
5
answers
1.1k
views
5
answers
1
vote
0
answers
572
views
0
answers
Error for TopHat
software error tophat rna-seq written 2.3 years ago by ahmetcingoz10 • updated 2.3 years ago by Jennifer Hillman Jackson23k
1
vote
1
answer
452
views
1
answer
TopHat Error After Updating Galaxy
tophat written 21 months ago by irinadominova10 • updated 21 months ago by Jennifer Hillman Jackson23k
1
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2
answers
539
views
2
answers
TopHat not working
tophat written 21 months ago by tran_tim10
1
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2
answers
473
views
2
answers
1
vote
1
answer
578
views
1
answer
Unable to finish job for both RNA-STAR and tophat2
samtools galaxy config admin tophat written 20 months ago by chaoyuan80 • updated 20 months ago by Jennifer Hillman Jackson23k
1
vote
1
answer
959
views
1
answer
Tophat2 index problem
tophat rna-seq written 20 months ago by yasser.morsy10
1
vote
1
answer
719
views
1
answer
2
votes
2
answers
599
views
2
answers
TopHat error only on one dataset?
tophat written 20 months ago by Brian Griffiths20 • updated 20 months ago by ablanchetcohen10
1
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0
answers
457
views
0
answers
intron retention analysis
galaxy tophat written 20 months ago by kuick7710
3
votes
2
answers
558
views
2
answers
TopHat alignment of RNA seq data
rna-seq parameters alignment tophat hiseq written 15 months ago by Diana Afonso10 • updated 15 months ago by Jennifer Hillman Jackson23k
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