Showing: tophatreset
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Top Hat deprecation--what should I use?
hisat2 mapping star tophat rna-seq written 12 weeks ago by sadequr.rahman10 • updated 12 weeks ago by Jennifer Hillman Jackson25k
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A tool is marked deprecated, should I use it?
hisat2 tutorials tophat queue rna-seq written 3 months ago by theodorcrispin0 • updated 3 months ago by jevanveen10
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157
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Reads are 0 in htseq-count
htseq-count tophat rna-seq written 4 months ago by mmfiruleva0 • updated 3 months ago by Jennifer Hillman Jackson25k
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Tophat Error for SRA accessions
rna-seq mapping tophat error written 5 months ago by chandrugcg_7710 • updated 5 months ago by Jennifer Hillman Jackson25k
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145
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HISAT2/TOPHAT alignment to a Rabbit Genome
hisat2 rabbit alignment tophat written 5 months ago by deemergd920 • updated 5 months ago by Jennifer Hillman Jackson25k
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Genome of Campylobacter jejuni 81-176
custom tools genome tophat fasta written 5 months ago by srivastava.1600 • updated 5 months ago by Jennifer Hillman Jackson25k
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Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat path written 21 months ago by deane30 • updated 6 months ago by yusheng_tan0
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"Unable to finish job" but no errors, data seems to be there?
tophat written 2.8 years ago by Brian Griffiths20 • updated 6 months ago by yusheng_tan0
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TopHat - set metadata manually or retry auto-detection
tophat rna-seq written 23 months ago by avoltz30 • updated 8 months ago by Wanderer10
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RNA Star: Problem with tool
hisat2 rnastar galaxy tophat rna-seq written 8 months ago by wcheng10 • updated 8 months ago by Jennifer Hillman Jackson25k
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Job execution delays due to input dataset states
hisat2 metadata jobs tophat queue written 8 months ago by lippsdd0 • updated 8 months ago by Jennifer Hillman Jackson25k
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233
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Finding gene names from TopHat results.
bam genenames bed tophat written 8 months ago by hamza_karakurt10 • updated 8 months ago by Jennifer Hillman Jackson25k
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306
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cDNA in TopHat
tophat rna-seq written 9 months ago by cased0 • updated 9 months ago by Jennifer Hillman Jackson25k
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GFF format not working with tophat
rna-seq bowtie tophat gff written 11 months ago by sarde2790 • updated 11 months ago by Jennifer Hillman Jackson25k
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Insert sizes in Galaxy
galaxy bowtie tophat rna-seq written 11 months ago by devbt1530
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GTF for hg18
cuffdiff gtf tophat written 11 months ago by jacox10 • updated 11 months ago by Jennifer Hillman Jackson25k
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Tophat vs Bowtie2
bam bowtie tophat rna-seq written 12 months ago by pattythepsuwan0
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233
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Can't auto detect metadata
galaxy software error tophat written 12 months ago by ab430 • updated 12 months ago by Jennifer Hillman Jackson25k
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6 follow
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GALAXY_SLOTS and slashes
tophat multi-processor multi-core rna-seq written 13 months ago by apozhitkov60 • updated 13 months ago by Jennifer Hillman Jackson25k
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TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 13 months ago by johanvn10 • updated 13 months ago by franklin_moreno0
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Tophat fails again and again
tophat rna-seq written 13 months ago by chayanikagoswami.sgt0 • updated 13 months ago by Jennifer Hillman Jackson25k
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Tophat is not anymore among the galaxy tools
tophat rna-seq written 13 months ago by franklin_moreno0 • updated 13 months ago by Devon Ryan1.9k
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