Showing: samtoolsreset
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rmdup - remove PCR duplicates from ChIP-seq data
chip-seq samtools written 3.6 years ago by david.fear10 • updated 3.6 years ago by Jennifer Hillman Jackson23k
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Tool: Merge Bam files
samtools tool written 3.6 years ago by david.fear10
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Convert SAM to sorted BAM
bam samtools sam sort written 3.3 years ago by biomonika60 • updated 3.3 years ago by Jennifer Hillman Jackson23k
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Depth Command In Sam Tools
bam samtools written 4.8 years ago by Els Willems30 • updated 4.7 years ago by Jennifer Hillman Jackson23k
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Tophat: Samtools not found (but dependencies are installed)
bam samtools galaxy tophat rna-seq written 3.6 years ago by daniel.heredia0 • updated 3.5 years ago by y.hoogstrate450
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Issues with SAM to BAM conversion
samtools galaxy written 2.5 years ago by rahneli0 • updated 2.5 years ago by Jennifer Hillman Jackson23k
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1
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Removing Low Quality Reads
bam samtools written 6.1 years ago by Getiria Onsongo40 • updated 6.1 years ago by Jennifer Hillman Jackson23k
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5
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5
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Cufflinks Fpkm
rna-seq bowtie alignment bam samtools cufflinks written 6.7 years ago by lishiyong50 • updated 6.7 years ago by Jeremy Goecks2.2k
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2
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2
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1.9k
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Sort Sam Or Bam
bam samtools written 6.0 years ago by Clare Sloggett120 • updated 6.0 years ago by Jennifer Hillman Jackson23k
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1
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1.9k
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1
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sam to fastq
samtools written 3.4 years ago by mduffy0 • updated 3.4 years ago by Jennifer Hillman Jackson23k
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1
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Combining Reads from 2 Lanes
bam samtools galaxy tophat rna-seq written 2.5 years ago by nashedm10 • updated 2.5 years ago by Philipe Moncuquet40
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Unable to upload (.bam) data file to local Galaxy
bam samtools galaxy path written 2.9 years ago by jchen01580 • updated 2.9 years ago by Jennifer Hillman Jackson23k
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Snp Calling Problems
bam samtools alignment bwa written 4.2 years ago by garzetti100 • updated 4.2 years ago by Jennifer Hillman Jackson23k
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1
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1.7k
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1
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Error Setting BAM Metadata
bam samtools galaxy alignment tophat written 3.3 years ago by changk160 • updated 3.3 years ago by Bjoern Gruening4.8k
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2
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1.6k
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2
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extract only unique mapped paired end reads
samtools galaxy bwa written 2.4 years ago by Mic70 • updated 2.4 years ago by frederik.coppens30
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RNA-seq analysis- HiSat2 and Cufflinks
samtools cufflinks alignment rna-seq written 17 months ago by Lindsay440 • updated 17 months ago by Devon Ryan1.8k
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1
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Error when execute archer tool inside galaxy
samtools galaxy bwa tool written 3.6 years ago by GPS20 • updated 3.5 years ago by Jennifer Hillman Jackson23k
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2
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2
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1.4k
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Tophat Error
bam samtools bowtie alignment written 6.2 years ago by zohra saci20 • updated 6.2 years ago by Jennifer Hillman Jackson23k
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1
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1.4k
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1
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Pysam Egg
bam samtools written 7.9 years ago by Erick Antezana570 • updated 7.9 years ago by Davide Cittaro140
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1
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0
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1
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Genbank Submission - How To Generate Fasta (Not Fastq) Files
bam samtools written 6.5 years ago by John David Osborne160 • updated 6.5 years ago by Jennifer Hillman Jackson23k
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How to integrate and run SoftSearch tool in galaxy.
bam samtools galaxy tool rna-seq written 3.6 years ago by Shirish20 • updated 3.6 years ago by Martin Čech ♦♦ 4.2k
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bwa_enz not found in archer analysis pipeline
samtools galaxy bwa tool written 3.6 years ago by Shirish20 • updated 3.5 years ago by Jennifer Hillman Jackson23k
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0
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3
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5
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1.2k
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1
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1.2k
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Tophat And Bowtie2
bam samtools bowtie alignment written 5.5 years ago by Luciano Cosme220
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1
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Can I generate random output file in galaxy using XML command Tag
samtools galaxy tool written 3.6 years ago by Shirish20 • updated 3.6 years ago by Martin Čech ♦♦ 4.2k
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Problem In Merging Two Bam File In Galaxy. Thanks For Help.
bam samtools written 6.2 years ago by Binbin You50 • updated 6.2 years ago by Jennifer Hillman Jackson23k
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