Showing: samtoolsreset
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mpileup warning and problem with bcftools call
samtools written 23 hours ago by aymeric.goyer0 • updated 18 hours ago by Jennifer Hillman Jackson25k
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Regarding reads extract from bam file
bamfile bam galaxy mapping samtools written 8 weeks ago by DL0 • updated 8 weeks ago by Jennifer Hillman Jackson25k
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Extract aligned exactly 1 time fron Bowtie2?
samtools bowtie2 galaxy alignment written 4 months ago by star0 • updated 4 months ago by Jennifer Hillman Jackson25k
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Understanding and decoding SAM or BAM flags
bam samtools flag bamcoverage sam written 4 months ago by jailyn.han10 • updated 4 months ago by Jennifer Hillman Jackson25k
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multi bam summary
chip-seq bam error sort samtools written 4 months ago by lnaren10 • updated 4 months ago by Jennifer Hillman Jackson25k
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Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 5 months ago by Daphnis0 • updated 5 months ago by Jennifer Hillman Jackson25k
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Filter BAM file by size
bam filter samtools picard written 5 months ago by aparicio24570 • updated 5 months ago by Jennifer Hillman Jackson25k
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How to remove soft clipping reads
samtools sam written 12 months ago by Juan Ledesma0 • updated 6 months ago by torsten.seemann0
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Trouble sorting a BAM file
samtools sort sortsam pca analysis written 7 months ago by xpna01t0 • updated 7 months ago by Jennifer Hillman Jackson25k
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SAM-to-BAM; an error occurred setting the metadata for this dataset.
samtools written 7 months ago by michael.magnussen.140 • updated 7 months ago by agatyr20
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Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat path written 23 months ago by deane30 • updated 8 months ago by yusheng_tan0
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Out Of Disk Space with Picard's FastqtoSam Tools from Galaxy
picard galaxy samtools written 8 months ago by mainulhossain0 • updated 8 months ago by Bjoern Gruening5.1k
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Use of slice to estimate rpkm/fpkm
slice samtools rna-seq fpkm/rpkm written 8 months ago by a.morris40 • updated 8 months ago by Jennifer Hillman Jackson25k
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SAM to BAM conversion ERRORS
bam samtools alignment bwa written 8 months ago by amra.dhabalia0 • updated 8 months ago by y.hoogstrate460
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Copy/paste single read sequences in excel
samtools galaxy written 10 months ago by a.klausegger0 • updated 10 months ago by Jennifer Hillman Jackson25k
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SAM-to-BAM (NGS: SAMtools)
samtools galaxy written 10 months ago by zli800 • updated 10 months ago by Devon Ryan1.9k
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pileup --position in galaxy
regions samtools pileup mpileup position written 11 months ago by mor.rub0 • updated 11 months ago by Jennifer Hillman Jackson25k
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