Showing: samtoolsreset
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sam to bam - Galaxy version 17.01
galaxy samtools local job-error written 15 months ago by bryan.hepworth30 • updated 15 months ago by Jennifer Hillman Jackson25k
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3
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5 follow
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bcftools view no longer present?
samtools galaxy snp written 3.8 years ago by abogutz30 • updated 3.1 years ago by Martin Čech ♦♦ 4.8k
4
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679
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5 follow
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Filter Bowtie 2 alignement
samtools bowtie alignment written 2.1 years ago by Mic70 • updated 2.1 years ago by Devon Ryan1.9k
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3
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526
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306
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5 follow
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Error when execute archer tool inside galaxy
samtools galaxy bwa tool written 4.2 years ago by GPS20 • updated 4.2 years ago by Jennifer Hillman Jackson25k
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0
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Pysam Egg
bam samtools written 8.6 years ago by Erick Antezana570 • updated 8.6 years ago by Davide Cittaro140
1
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1.5k
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1
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How to integrate and run SoftSearch tool in galaxy.
bam samtools galaxy tool rna-seq written 4.3 years ago by Shirish20 • updated 4.3 years ago by Martin Čech ♦♦ 4.8k
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3
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4.5k
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3
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Tool: Merge Bam files
samtools tool written 4.2 years ago by david.fear10
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1
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Tophat: Samtools not found (but dependencies are installed)
bam samtools galaxy tophat rna-seq written 4.2 years ago by daniel.heredia0 • updated 4.2 years ago by y.hoogstrate460
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1.5k
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1
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bwa_enz not found in archer analysis pipeline
samtools galaxy bwa tool written 4.2 years ago by Shirish20 • updated 4.2 years ago by Jennifer Hillman Jackson25k
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1
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854
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1
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3
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3
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Mpile up output
samtools written 3.2 years ago by d.angra50
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Issues with SAM to BAM conversion
samtools galaxy written 3.1 years ago by rahneli0 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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1
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mpileup metadata problem in workflow
samtools mpileup metadata written 3.0 years ago by abogutz30 • updated 3.0 years ago by Jennifer Hillman Jackson25k
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2
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2
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Faulty BAM/SAM files after Bowtie2, filtering and sorting
bam samtools galaxy written 2.6 years ago by nash.claire10 • updated 2.6 years ago by Jennifer Hillman Jackson25k
1
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1
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782
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1
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Unable to finish job for both RNA-STAR and tophat2
samtools galaxy config admin tophat written 2.3 years ago by chaoyuan80 • updated 2.3 years ago by Jennifer Hillman Jackson25k
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Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat path written 22 months ago by deane30 • updated 6 months ago by yusheng_tan0
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0
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313
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0
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Sample name on BedCov results
samtools bedcov written 14 months ago by shirley10
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338
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0
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1
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1
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424
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SAM-to-BAM (NGS: SAMtools)
samtools galaxy written 9 months ago by zli800 • updated 9 months ago by Devon Ryan1.9k
4
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291
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1
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Out Of Disk Space with Picard's FastqtoSam Tools from Galaxy
picard galaxy samtools written 7 months ago by mainulhossain0 • updated 6 months ago by Bjoern Gruening5.1k
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2
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1
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506
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0
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2
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Gatk Best Practices With Local Installation Of Galaxy
bam samtools written 7.0 years ago by Camille Stephan30 • updated 6.9 years ago by Jennifer Hillman Jackson25k
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976
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Mpileup Tool
bam samtools mpileup gmod written 7.0 years ago by Keith Funkhouser10 • updated 6.9 years ago by Keith Funkhouser10
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Sort Sam Or Bam
bam samtools written 6.7 years ago by Clare Sloggett120 • updated 6.7 years ago by Jennifer Hillman Jackson25k
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3
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3
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rmdup - remove PCR duplicates from ChIP-seq data
chip-seq samtools written 4.3 years ago by david.fear10 • updated 4.3 years ago by Jennifer Hillman Jackson25k
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