Showing: samtoolsreset
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4
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sam to bam - Galaxy version 17.01
galaxy samtools local job-error written 7 months ago by bryan.hepworth30 • updated 7 months ago by Jennifer Hillman Jackson23k
6
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3
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994
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5 follow
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bcftools view no longer present?
samtools galaxy snp written 3.1 years ago by abogutz30 • updated 2.5 years ago by Martin Čech ♦♦ 4.2k
4
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1
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396
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5 follow
1
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Filter Bowtie 2 alignement
samtools bowtie alignment written 17 months ago by Mic70 • updated 17 months ago by Devon Ryan1.8k
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3
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290
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5 follow
3
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2
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128
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5 follow
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1
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1.5k
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1
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Error when execute archer tool inside galaxy
samtools galaxy bwa tool written 3.5 years ago by GPS20 • updated 3.5 years ago by Jennifer Hillman Jackson23k
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1.4k
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1
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3
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Forum: An entertaining read about BWA, Picard, GATK
galaxy software error forum bwa bam samtools written 9 months ago by apozhitkov50 • updated 5 months ago by linying91140
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1
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1.4k
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1
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Pysam Egg
bam samtools written 7.9 years ago by Erick Antezana570 • updated 7.9 years ago by Davide Cittaro140
1
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1
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1.3k
views
1
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How to integrate and run SoftSearch tool in galaxy.
bam samtools galaxy tool rna-seq written 3.6 years ago by Shirish20 • updated 3.6 years ago by Martin Čech ♦♦ 4.2k
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3
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3.9k
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3
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Tool: Merge Bam files
samtools tool written 3.6 years ago by david.fear10
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1
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2.3k
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1
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Tophat: Samtools not found (but dependencies are installed)
bam samtools galaxy tophat rna-seq written 3.6 years ago by daniel.heredia0 • updated 3.5 years ago by y.hoogstrate450
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1
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1.3k
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1
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bwa_enz not found in archer analysis pipeline
samtools galaxy bwa tool written 3.5 years ago by Shirish20 • updated 3.5 years ago by Jennifer Hillman Jackson23k
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1
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697
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1
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1
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3
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729
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3
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Mpile up output
samtools written 2.5 years ago by d.angra50
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2.2k
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1
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Issues with SAM to BAM conversion
samtools galaxy written 2.5 years ago by rahneli0 • updated 2.5 years ago by Jennifer Hillman Jackson23k
7
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1
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918
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1
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mpileup metadata problem in workflow
samtools mpileup metadata written 2.3 years ago by abogutz30 • updated 2.3 years ago by Jennifer Hillman Jackson23k
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2
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5
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1.0k
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5
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1
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Faulty BAM/SAM files after Bowtie2, filtering and sorting
bam samtools galaxy written 23 months ago by nash.claire10 • updated 23 months ago by Jennifer Hillman Jackson23k
1
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1
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554
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1
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Unable to finish job for both RNA-STAR and tophat2
samtools galaxy config admin tophat written 19 months ago by chaoyuan80 • updated 19 months ago by Jennifer Hillman Jackson23k
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2
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481
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2
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0
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133
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0
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Sample name on BedCov results
samtools bedcov written 6 months ago by shirley10
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143
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0
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1
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1
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133
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SAM-to-BAM (NGS: SAMtools)
samtools galaxy written 6 weeks ago by zli800 • updated 6 weeks ago by Devon Ryan1.8k
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2
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Gatk Best Practices With Local Installation Of Galaxy
bam samtools written 6.4 years ago by Camille Stephan30 • updated 6.3 years ago by Jennifer Hillman Jackson23k
0
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1
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822
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1
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Mpileup Tool
bam samtools mpileup gmod written 6.3 years ago by Keith Funkhouser10 • updated 6.3 years ago by Keith Funkhouser10
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1
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1.9k
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1
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Sort Sam Or Bam
bam samtools written 6.0 years ago by Clare Sloggett120 • updated 6.0 years ago by Jennifer Hillman Jackson23k
1
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3
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3.9k
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3
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rmdup - remove PCR duplicates from ChIP-seq data
chip-seq samtools written 3.6 years ago by david.fear10 • updated 3.6 years ago by Jennifer Hillman Jackson23k
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1.9k
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sam to fastq
samtools written 3.4 years ago by mduffy0 • updated 3.4 years ago by Jennifer Hillman Jackson23k
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3.9k
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1
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Convert SAM to sorted BAM
bam samtools sam sort written 3.3 years ago by biomonika60 • updated 3.3 years ago by Jennifer Hillman Jackson23k
2
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1
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1.7k
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1
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Error Setting BAM Metadata
bam samtools galaxy alignment tophat written 3.3 years ago by changk160 • updated 3.3 years ago by Bjoern Gruening4.8k
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3
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3
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Unable to upload (.bam) data file to local Galaxy
bam samtools galaxy path written 2.9 years ago by jchen01580 • updated 2.9 years ago by Jennifer Hillman Jackson23k
5
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2
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2.0k
views
2
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