Showing: samtoolsreset
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pileup --position in galaxy
regions samtools pileup mpileup position written 12 months ago by mor.rub0 • updated 12 months ago by Jennifer Hillman Jackson25k
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samtools for 32-bit local galaxy
samtools local path written 12 months ago by harryln10 • updated 12 months ago by Jennifer Hillman Jackson25k
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How to extract SNPs from galaxy workflow
samtools galaxy snp alignment written 14 months ago by sureshbabu.angara0 • updated 13 months ago by Jennifer Hillman Jackson25k
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Sample name on BedCov results
samtools bedcov written 16 months ago by shirley10
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How to generate pileup file
chip-seq samtools pileup usegalaxy.org usage written 17 months ago by dikshagarg04090 • updated 17 months ago by Jennifer Hillman Jackson25k
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sam to bam - Galaxy version 17.01
galaxy samtools local job-error written 18 months ago by bryan.hepworth30 • updated 18 months ago by Jennifer Hillman Jackson25k
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Interpreting Stats output of SAM tools
chip-seq samtools bam written 20 months ago by hpremathilake20 • updated 20 months ago by Jennifer Hillman Jackson25k
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MAF to VCF showing Indels and snps
samtools alignment written 20 months ago by kmurph550 • updated 20 months ago by Jennifer Hillman Jackson25k
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HISAT2 path problem (I think)
hisat2 samtools ubuntu path written 20 months ago by vaughandy10 • updated 20 months ago by Jennifer Hillman Jackson25k
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Can't do sam to bam conversion
samtools bowtie snp written 22 months ago by tanvee0 • updated 22 months ago by Jennifer Hillman Jackson25k
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Upload Jatropha Reference genome for Bowtie2
samtools galaxy bowtie alignment bwa written 23 months ago by anoopanandmalik0 • updated 23 months ago by Jennifer Hillman Jackson25k
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'BEDcov' and 'compute depth and breadth'
bam samtools coverage bed bedtools written 2.0 years ago by c.zijlstra0 • updated 2.0 years ago by Jennifer Hillman Jackson25k
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Bam File error uploading
samtools error admin path upload written 2.2 years ago by shambyross10 • updated 2.1 years ago by y.hoogstrate460
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Missing genome for SAM-to-BAM conversion
samtools database metadata tool input written 2.1 years ago by nicholas.anthony0 • updated 2.1 years ago by Jennifer Hillman Jackson25k
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RNA-seq analysis- HiSat2 and Cufflinks
samtools cufflinks alignment rna-seq written 2.3 years ago by Lindsay440 • updated 2.3 years ago by Devon Ryan1.9k
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Filter Bowtie 2 alignement
samtools bowtie alignment written 2.3 years ago by Mic70 • updated 2.3 years ago by Devon Ryan1.9k
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Visualizing mpileup data
bam samtools galaxy snp written 2.3 years ago by rquigl0110 • updated 2.3 years ago by Jennifer Hillman Jackson25k
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