Showing: samtoolsreset
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How to generate pileup file
chip-seq samtools pileup usegalaxy.org usage written 12 months ago by dikshagarg04090 • updated 12 months ago by Jennifer Hillman Jackson24k
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sam to bam - Galaxy version 17.01
galaxy samtools local job-error written 13 months ago by bryan.hepworth30 • updated 13 months ago by Jennifer Hillman Jackson24k
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Interpreting Stats output of SAM tools
chip-seq samtools bam written 15 months ago by hpremathilake20 • updated 15 months ago by Jennifer Hillman Jackson24k
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MAF to VCF showing Indels and snps
samtools alignment written 15 months ago by kmurph550 • updated 15 months ago by Jennifer Hillman Jackson24k
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HISAT2 path problem (I think)
hisat2 samtools ubuntu path written 15 months ago by vaughandy10 • updated 15 months ago by Jennifer Hillman Jackson24k
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Can't do sam to bam conversion
samtools bowtie snp written 17 months ago by tanvee0 • updated 17 months ago by Jennifer Hillman Jackson24k
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Upload Jatropha Reference genome for Bowtie2
samtools galaxy bowtie alignment bwa written 18 months ago by anoopanandmalik0 • updated 18 months ago by Jennifer Hillman Jackson24k
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'BEDcov' and 'compute depth and breadth'
bam samtools coverage bed bedtools written 19 months ago by c.zijlstra0 • updated 19 months ago by Jennifer Hillman Jackson24k
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Bam File error uploading
samtools error admin path upload written 21 months ago by shambyross10 • updated 19 months ago by y.hoogstrate460
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Missing genome for SAM-to-BAM conversion
samtools database metadata tool input written 20 months ago by nicholas.anthony0 • updated 20 months ago by Jennifer Hillman Jackson24k
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RNA-seq analysis- HiSat2 and Cufflinks
samtools cufflinks alignment rna-seq written 23 months ago by Lindsay440 • updated 22 months ago by Devon Ryan1.9k
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Filter Bowtie 2 alignement
samtools bowtie alignment written 22 months ago by Mic70 • updated 22 months ago by Devon Ryan1.9k
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Visualizing mpileup data
bam samtools galaxy snp written 23 months ago by rquigl0110 • updated 23 months ago by Jennifer Hillman Jackson24k
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Normalization when convert bam to wig
bam samtools galaxy rna-seq written 23 months ago by rongruo19880 • updated 23 months ago by Jennifer Hillman Jackson24k
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Need help with mpileup tool on Galaxy
samtools mpileup galaxy written 23 months ago by errityf0 • updated 23 months ago by Jennifer Hillman Jackson24k
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Mate_Not_Found after FixMate and filter
bam samtools medip-seq written 2.0 years ago by nhs0 • updated 2.0 years ago by Jennifer Hillman Jackson24k
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Unable to finish job for both RNA-STAR and tophat2
samtools galaxy config admin tophat written 2.1 years ago by chaoyuan80 • updated 2.1 years ago by Jennifer Hillman Jackson24k
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running samtools faidx
samtools written 2.1 years ago by jannetta.steyn10
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Merge sam files
samtools merge written 2.1 years ago by abdelazeem_abdelhameed20155050 • updated 2.1 years ago by Jennifer Hillman Jackson24k
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