Showing: samtoolsreset
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Missing genome for SAM-to-BAM conversion
samtools database metadata tool input written 15 months ago by nicholas.anthony0 • updated 15 months ago by Jennifer Hillman Jackson23k
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RNA-seq analysis- HiSat2 and Cufflinks
samtools cufflinks alignment rna-seq written 17 months ago by Lindsay440 • updated 17 months ago by Devon Ryan1.7k
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5 follow
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Filter Bowtie 2 alignement
samtools bowtie alignment written 17 months ago by Mic70 • updated 17 months ago by Devon Ryan1.7k
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Visualizing mpileup data
bam samtools galaxy snp written 17 months ago by rquigl0110 • updated 17 months ago by Jennifer Hillman Jackson23k
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Normalization when convert bam to wig
bam samtools galaxy rna-seq written 18 months ago by rongruo19880 • updated 18 months ago by Jennifer Hillman Jackson23k
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Need help with mpileup tool on Galaxy
samtools mpileup galaxy written 18 months ago by errityf0 • updated 18 months ago by Jennifer Hillman Jackson23k
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Mate_Not_Found after FixMate and filter
bam samtools medip-seq written 19 months ago by nhs0 • updated 19 months ago by Jennifer Hillman Jackson23k
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Unable to finish job for both RNA-STAR and tophat2
samtools galaxy config admin tophat written 19 months ago by chaoyuan80 • updated 19 months ago by Jennifer Hillman Jackson23k
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running samtools faidx
samtools written 19 months ago by jannetta.steyn10
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Merge sam files
samtools merge written 20 months ago by abdelazeem_abdelhameed20155050 • updated 20 months ago by Jennifer Hillman Jackson23k
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problems with SAM-to-BAM tool
samtools tool error written 22 months ago by jxmarkfernandez0 • updated 22 months ago by Jennifer Hillman Jackson23k
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Cannot filer pileup result
samtools written 22 months ago by wangshu120 • updated 22 months ago by Jennifer Hillman Jackson23k
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Faulty BAM/SAM files after Bowtie2, filtering and sorting
bam samtools galaxy written 23 months ago by nash.claire10 • updated 23 months ago by Jennifer Hillman Jackson23k
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Filter Pileup Error in SAMtools
samtools galaxy software error written 23 months ago by john.doyle0 • updated 23 months ago by Jennifer Hillman Jackson23k
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What is causing this MPileup error in Galaxy?
samtools galaxy written 2.0 years ago by bryantl90 • updated 2.0 years ago by Jennifer Hillman Jackson23k
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Commandline Bowtie2 and variant call help.
samtools mpileup bowtie variantcall written 2.0 years ago by syrez.m0 • updated 2.0 years ago by Jennifer Hillman Jackson23k
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Sam-to-bam in workflow
samtools galaxy written 2.1 years ago by lucille.delisle0 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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Commandline SAMtools/BEDtools help!
samtools flagstat command line bedtools written 2.1 years ago by syrez.m0 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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mtDNA demo SAM to BAM problem GALAXY
bam samtools galaxy written 2.1 years ago by walshisjohn0 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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Problem with the Filter SAM/BAM module
bam samtools software error written 2.2 years ago by nash.claire10 • updated 2.2 years ago by Jennifer Hillman Jackson23k
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SAMtools Merge BAM files hangs
bam samtools galaxy written 2.3 years ago by kr8110 • updated 2.3 years ago by Jennifer Hillman Jackson23k
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mpileup metadata problem in workflow
samtools mpileup metadata written 2.3 years ago by abogutz30 • updated 2.3 years ago by Jennifer Hillman Jackson23k
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extract only unique mapped paired end reads
samtools galaxy bwa written 2.3 years ago by Mic70 • updated 2.3 years ago by frederik.coppens30
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