Showing: samtoolsreset
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Forum: An entertaining read about BWA, Picard, GATK
galaxy software error forum bwa bam samtools written 5 months ago by apozhitkov40 • updated 8 weeks ago by linying91140
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Sample name on BedCov results
samtools bedcov written 9 weeks ago by shirley10
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How to generate pileup file
chip-seq samtools pileup usegalaxy.org usage written 3 months ago by dikshagarg04090 • updated 3 months ago by Jennifer Hillman Jackson22k
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sam to bam - Galaxy version 17.01
galaxy samtools local job-error written 3 months ago by bryan.hepworth30 • updated 3 months ago by Jennifer Hillman Jackson22k
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Interpreting Stats output of SAM tools
chip-seq samtools bam written 5 months ago by hpremathilake20 • updated 5 months ago by Jennifer Hillman Jackson22k
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MAF to VCF showing Indels and snps
samtools alignment written 6 months ago by kmurph550 • updated 6 months ago by Jennifer Hillman Jackson22k
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Can't do sam to bam conversion
samtools bowtie snp written 8 months ago by tanvee0 • updated 8 months ago by Jennifer Hillman Jackson22k
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'BEDcov' and 'compute depth and breadth'
bam samtools coverage bed bedtools written 10 months ago by c.zijlstra0 • updated 10 months ago by Jennifer Hillman Jackson22k
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Bam File error uploading
samtools error admin path upload written 11 months ago by shambyross10 • updated 10 months ago by y.hoogstrate440
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Missing genome for SAM-to-BAM conversion
samtools database metadata tool input written 11 months ago by nicholas.anthony0 • updated 11 months ago by Jennifer Hillman Jackson22k
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RNA-seq analysis- HiSat2 and Cufflinks
samtools cufflinks alignment rna-seq written 13 months ago by Lindsay440 • updated 13 months ago by Devon Ryan1.6k
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Filter Bowtie 2 alignement
samtools bowtie alignment written 13 months ago by Mic70 • updated 13 months ago by Devon Ryan1.6k
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Visualizing mpileup data
bam samtools galaxy snp written 14 months ago by rquigl0110 • updated 14 months ago by Jennifer Hillman Jackson22k
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Normalization when convert bam to wig
bam samtools galaxy rna-seq written 14 months ago by rongruo19880 • updated 14 months ago by Jennifer Hillman Jackson22k
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