Showing: samtoolsreset
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Trouble sorting a BAM file
samtools sort sortsam pca analysis written 11 days ago by xpna01t0 • updated 11 days ago by Jennifer Hillman Jackson24k
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Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat path written 16 months ago by deane30 • updated 27 days ago by yusheng_tan0
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Out Of Disk Space with Picard's FastqtoSam Tools from Galaxy
picard galaxy samtools written 5 weeks ago by mainulhossain0 • updated 29 days ago by Bjoern Gruening4.8k
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Use of slice to estimate rpkm/fpkm
slice samtools rna-seq fpkm/rpkm written 5 weeks ago by a.morris10 • updated 5 weeks ago by Jennifer Hillman Jackson24k
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SAM to BAM conversion ERRORS
bam samtools alignment bwa written 5 weeks ago by amra.dhabalia0 • updated 5 weeks ago by y.hoogstrate460
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Copy/paste single read sequences in excel
samtools galaxy written 3 months ago by a.klausegger0 • updated 3 months ago by Jennifer Hillman Jackson24k
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SAM-to-BAM (NGS: SAMtools)
samtools galaxy written 3 months ago by zli800 • updated 3 months ago by Devon Ryan1.9k
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pileup --position in galaxy
regions samtools pileup mpileup position written 4 months ago by mor.rub0 • updated 4 months ago by Jennifer Hillman Jackson24k
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samtools for 32-bit local galaxy
samtools local path written 4 months ago by harryln10 • updated 4 months ago by Jennifer Hillman Jackson24k
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How to remove soft clipping reads
samtools sam written 5 months ago by Juan Ledesma0 • updated 5 months ago by Jennifer Hillman Jackson24k
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How to extract SNPs from galaxy workflow
samtools galaxy snp alignment written 6 months ago by sureshbabu.angara0 • updated 5 months ago by Jennifer Hillman Jackson24k
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Forum: An entertaining read about BWA, Picard, GATK
galaxy software error forum bwa bam samtools written 11 months ago by apozhitkov50 • updated 8 months ago by linying91140
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Sample name on BedCov results
samtools bedcov written 8 months ago by shirley10
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How to generate pileup file
chip-seq samtools pileup usegalaxy.org usage written 9 months ago by dikshagarg04090 • updated 9 months ago by Jennifer Hillman Jackson24k
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sam to bam - Galaxy version 17.01
galaxy samtools local job-error written 10 months ago by bryan.hepworth30 • updated 9 months ago by Jennifer Hillman Jackson24k
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Interpreting Stats output of SAM tools
chip-seq samtools bam written 12 months ago by hpremathilake20 • updated 12 months ago by Jennifer Hillman Jackson24k
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MAF to VCF showing Indels and snps
samtools alignment written 12 months ago by kmurph550 • updated 12 months ago by Jennifer Hillman Jackson24k
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HISAT2 path problem (I think)
hisat2 samtools ubuntu path written 12 months ago by vaughandy10 • updated 12 months ago by Jennifer Hillman Jackson24k
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