Showing: samtoolsreset
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pileup --position in galaxy
regions samtools pileup mpileup position written 14 days ago by mor.rub0 • updated 13 days ago by Jennifer Hillman Jackson23k
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samtools for 32-bit local galaxy
samtools local path written 18 days ago by harryln0 • updated 18 days ago by Jennifer Hillman Jackson23k
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How to remove soft clipping reads
samtools sam written 5 weeks ago by Juan Ledesma0 • updated 5 weeks ago by Jennifer Hillman Jackson23k
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How to extract SNPs from galaxy workflow
samtools galaxy snp alignment written 8 weeks ago by sureshbabu.angara0 • updated 6 weeks ago by Jennifer Hillman Jackson23k
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Forum: An entertaining read about BWA, Picard, GATK
galaxy software error forum bwa bam samtools written 7 months ago by apozhitkov40 • updated 3 months ago by linying91140
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Sample name on BedCov results
samtools bedcov written 4 months ago by shirley10
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How to generate pileup file
chip-seq samtools pileup usegalaxy.org usage written 5 months ago by dikshagarg04090 • updated 5 months ago by Jennifer Hillman Jackson23k
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sam to bam - Galaxy version 17.01
galaxy samtools local job-error written 5 months ago by bryan.hepworth30 • updated 5 months ago by Jennifer Hillman Jackson23k
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Interpreting Stats output of SAM tools
chip-seq samtools bam written 7 months ago by hpremathilake20 • updated 7 months ago by Jennifer Hillman Jackson23k
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MAF to VCF showing Indels and snps
samtools alignment written 8 months ago by kmurph550 • updated 8 months ago by Jennifer Hillman Jackson23k
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HISAT2 path problem (I think)
hisat2 samtools ubuntu path written 8 months ago by vaughandy10 • updated 8 months ago by Jennifer Hillman Jackson23k
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Can't do sam to bam conversion
samtools bowtie snp written 10 months ago by tanvee0 • updated 10 months ago by Jennifer Hillman Jackson23k
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Upload Jatropha Reference genome for Bowtie2
samtools galaxy bowtie alignment bwa written 11 months ago by anoopanandmalik0 • updated 11 months ago by Jennifer Hillman Jackson23k
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'BEDcov' and 'compute depth and breadth'
bam samtools coverage bed bedtools written 12 months ago by c.zijlstra0 • updated 12 months ago by Jennifer Hillman Jackson23k
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Bam File error uploading
samtools error admin path upload written 13 months ago by shambyross10 • updated 12 months ago by y.hoogstrate440
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Missing genome for SAM-to-BAM conversion
samtools database metadata tool input written 13 months ago by nicholas.anthony0 • updated 13 months ago by Jennifer Hillman Jackson23k
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