Showing: samtoolsreset
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Forum: An entertaining read about BWA, Picard, GATK
galaxy software error forum bwa bam samtools written 27 days ago by apozhitkov10 • updated 26 days ago by Guy Reeves710
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Interpreting Stats output of SAM tools
chip-seq samtools bam written 4 weeks ago by hpremathilake20 • updated 4 weeks ago by Jennifer Hillman Jackson21k
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MAF to VCF showing Indels and snps
samtools alignment written 5 weeks ago by kmurph550 • updated 5 weeks ago by Jennifer Hillman Jackson21k
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Can't do sam to bam conversion
samtools bowtie snp written 3 months ago by tanvee0 • updated 3 months ago by Jennifer Hillman Jackson21k
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'BEDcov' and 'compute depth and breadth'
bam samtools coverage bed bedtools written 5 months ago by c.zijlstra0 • updated 5 months ago by Jennifer Hillman Jackson21k
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Bam File error uploading
samtools error admin path upload written 7 months ago by shambyross10 • updated 5 months ago by y.hoogstrate400
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RNA-seq analysis- HiSat2 and Cufflinks
samtools cufflinks alignment rna-seq written 9 months ago by Lindsay440 • updated 8 months ago by Devon Ryan1.3k
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Filter Bowtie 2 alignement
samtools bowtie alignment written 8 months ago by Mic70 • updated 8 months ago by Devon Ryan1.3k
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Visualizing mpileup data
bam samtools galaxy snp written 9 months ago by rquigl0110 • updated 9 months ago by Jennifer Hillman Jackson21k
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Normalization when convert bam to wig
bam samtools galaxy rna-seq written 9 months ago by rongruo19880 • updated 9 months ago by Jennifer Hillman Jackson21k
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Need help with mpileup tool on Galaxy
samtools mpileup galaxy written 9 months ago by errityf0 • updated 9 months ago by Jennifer Hillman Jackson21k
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Mate_Not_Found after FixMate and filter
bam samtools medip-seq written 10 months ago by nhs0 • updated 10 months ago by Jennifer Hillman Jackson21k
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Unable to finish job for both RNA-STAR and tophat2
samtools galaxy config admin tophat written 11 months ago by chaoyuan60 • updated 11 months ago by Jennifer Hillman Jackson21k
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running samtools faidx
samtools written 11 months ago by jannetta.steyn10
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Merge sam files
samtools merge written 12 months ago by abdelazeem_abdelhameed20155050 • updated 12 months ago by Jennifer Hillman Jackson21k
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