Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Showing: samtools • reset
or   Classic search
<prev • 201 results • page 1 of 6 • next >
1
vote
3
answers
167
views
3
answers
Ubuntu 18.04. Samtools missing tool dependencies
ncurses 5.9 samtools galaxy admin ubuntu written 25 days ago by alexshakhin • 0
0
votes
1
answer
66
views
1
answer
Extract aligned exactly 1 time fron Bowtie2?
samtools bowtie2 galaxy alignment written 5 weeks ago by star • 0 • updated 5 weeks ago by Jennifer Hillman Jackson ♦ 25k
1
vote
1
answer
61
views
1
answer
Understanding and decoding SAM or BAM flags
bam samtools flag bamcoverage sam written 6 weeks ago by jailyn.han • 10 • updated 5 weeks ago by Jennifer Hillman Jackson ♦ 25k
2
votes
1
answer
97
views
1
answer
multi bam summary
chip-seq bam error sort samtools written 6 weeks ago by lnaren • 10 • updated 6 weeks ago by Jennifer Hillman Jackson ♦ 25k
0
votes
2
answers
74
views
2
answers
galaxy_filter_sam report error
bam samtools galaxy sort picard written 7 weeks ago by garentguuu • 0
0
votes
1
answer
90
views
1
answer
Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 10 weeks ago by Daphnis • 0 • updated 9 weeks ago by Jennifer Hillman Jackson ♦ 25k
0
votes
1
answer
89
views
1
answer
bam_index_build2() not yet implemented exception on local Galaxy instance - sam-to-bam
bam samtools bam_index_build2() sam written 11 weeks ago by nhung • 0 • updated 10 weeks ago by Jennifer Hillman Jackson ♦ 25k
0
votes
1
answer
93
views
1
answer
Filter BAM file by size
bam filter samtools picard written 11 weeks ago by aparicio2457 • 0 • updated 10 weeks ago by Jennifer Hillman Jackson ♦ 25k
0
votes
0
answers
117
views
0
answers
Incorrect dependencies used during job run
samtools dependency written 12 weeks ago by rmse17 • 0
0
votes
2
answers
488
views
2
answers
How to remove soft clipping reads
samtools sam written 9 months ago by Juan Ledesma • 0 • updated 3 months ago by torsten.seemann • 0
0
votes
1
answer
235
views
1
answer
Create and extract consensus sequence after initial genome mapping using a custom genome
assembly samtools galaxy rna-seq written 3 months ago by manjunath.keremane • 0 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k
1
vote
2
answers
196
views
2
answers
MPileup SNP and indel caller (Galalxy Version 0.0.1) error
samtools mpileup software error written 3 months ago by vanam • 30
0
votes
1
answer
113
views
1
answer
Trouble sorting a BAM file
samtools sort sortsam pca analysis written 4 months ago by xpna01t • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
0
votes
1
answer
119
views
1
answer
SAM-to-BAM; an error occurred setting the metadata for this dataset.
samtools written 4 months ago by michael.magnussen.14 • 0 • updated 4 months ago by agatyr • 20
2
votes
1
answer
383
views
1
answer
samtool sort error in sorting BAM files by read name
bam samtools galaxy software error written 4 months ago by egrossi • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
1
vote
1
answer
243
views
1
answer
SAM-to-BAM 'Failed runtime validation of Using reference genome' Error - Local Galaxy instance
bam samtools genome sam index written 5 months ago by nhung • 0 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
2
votes
1
answer
137
views
1
answer
Want all counts on MPileup including zero counts
wrapper samtools mpileup tool option written 5 months ago by ghalib.bardai • 10 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
2
votes
5
answers
1.4k
views
5
answers
Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat error written 2.8 years ago by jmnm2201 • 0 • updated 5 months ago by yusheng_tan • 0
3
votes
2
answers
1.5k
views
2
answers
Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat path written 20 months ago by deane • 30 • updated 5 months ago by yusheng_tan • 0
4
votes
1
answer
235
views
1
answer
Out Of Disk Space with Picard's FastqtoSam Tools from Galaxy
picard galaxy samtools written 5 months ago by mainulhossain • 0 • updated 5 months ago by Bjoern Gruening ♦ 5.0k
2
votes
1
answer
282
views
1
answer
Filter SAM or BAM: "unknown reference name" when trying to select multiple chromossomes
bam samtools software error aligment written 5 months ago by eurioste • 40 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
0
votes
1
answer
131
views
1
answer
Use of slice to estimate rpkm/fpkm
slice samtools rna-seq fpkm/rpkm written 5 months ago by a.morris • 10 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
1
vote
1
answer
239
views
1
answer
SAM to BAM conversion ERRORS
bam samtools alignment bwa written 5 months ago by amra.dhabalia • 0 • updated 5 months ago by y.hoogstrate • 460
1
vote
1
answer
129
views
1
answer
BWA error, dataset conversion, history download questions
dataset samtools history download bwa written 5 months ago by samira.kalayinia • 0 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
0
votes
3
answers
391
views
3
answers
Galaxy tool development - how do I get a working samtools?
samtools galaxy written 6 months ago by crashfrog • 0
0
votes
1
answer
213
views
1
answer
Copy/paste single read sequences in excel
samtools galaxy written 7 months ago by a.klausegger • 0 • updated 7 months ago by Jennifer Hillman Jackson ♦ 25k
1
vote
1
answer
357
views
1
answer
SAM-to-BAM (NGS: SAMtools)
samtools galaxy written 7 months ago by zli80 • 0 • updated 7 months ago by Devon Ryan • 1.9k
0
votes
1
answer
164
views
1
answer
pileup --position in galaxy
regions samtools pileup mpileup position written 8 months ago by mor.rub • 0 • updated 8 months ago by Jennifer Hillman Jackson ♦ 25k
0
votes
1
answer
328
views
1
answer
samtools for 32-bit local galaxy
samtools local path written 8 months ago by harryln • 10 • updated 8 months ago by Jennifer Hillman Jackson ♦ 25k
0
votes
1
answer
328
views
1
answer
Extract assembled transcripts from Cufflinks gtf without to use reference genome
bam samtools cufflinks gtf rna-seq written 9 months ago by marija.djurdjevic • 30 • updated 9 months ago by Jennifer Hillman Jackson ♦ 25k
0
votes
1
answer
300
views
1
answer
How to extract SNPs from galaxy workflow
samtools galaxy snp alignment written 10 months ago by sureshbabu.angara • 0 • updated 9 months ago by Jennifer Hillman Jackson ♦ 25k
2
votes
0
answers
297
views
0
answers
Naive Variant Caller doesn't output variants wile mpileup does
nvc samtools mpileup written 10 months ago by biomonika • 60
0
votes
2
answers
457
views
2
answers
MNase ChIP-seq paired-end data analysis ?
chip-seq samtools galaxy bowtie alignment written 10 months ago by ghahhari.nm • 0
3
votes
5
answers
1.6k
views
5
answers
Bowtie2 error on locally installed Galaxy : unable to finish job
python bowtie2 oserror path samtools written 2.3 years ago by chaoyuan • 80 • updated 11 months ago by Jennifer Hillman Jackson ♦ 25k
1
vote
0
answers
276
views
0
answers
Sample name on BedCov results
samtools bedcov written 12 months ago by shirley • 10
<prev • 201 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • United States, 7 hours ago
  • United States, 11 hours ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 84 users visited in the last hour