Showing: rna-seqreset
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3
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1
answer
4.1k
views
10 follow
1
answer
Using DESeq2 inside Galaxy
deseq2 galaxy rna-seq written 2.5 years ago by marcelops20 • updated 2.5 years ago by Bjoern Gruening5.1k
4
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4
answers
2.0k
views
8 follow
4
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Disk quota at 100% when I believe it should be less than 50%
galaxy software error rna-seq written 3.4 years ago by Eric A. Wold0 • updated 2.1 years ago by fukunaga10
0
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1
answer
1.5k
views
7 follow
1
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Error Running Cufflinks On Galaxy
cufflinks bowtie alignment rna-seq written 7.3 years ago by David Robinson10 • updated 7.3 years ago by Jennifer Hillman Jackson25k
10
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4
answers
1.6k
views
7 follow
4
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cufflinks-job submission failed
galaxy cufflinks rna-seq written 3.6 years ago by raj_26292020 • updated 3.5 years ago by carlos30
9
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6
answers
2.0k
views
7 follow
6
answers
TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 15 months ago by johanvn10 • updated 15 months ago by franklin_moreno0
5
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1
answer
1.8k
views
6 follow
1
answer
Error with cuffdiff
cuffdiff software error rna-seq written 3.3 years ago by drbrown20 • updated 3.3 years ago by Martin Čech ♦♦ 4.8k
6
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0
answers
639
views
6 follow
0
answers
TopHat not processing RNA-seq FASTQ file
rna-seq written 2.2 years ago by ang3x20 • updated 2.2 years ago by Jennifer Hillman Jackson25k
3
votes
2
answers
2.0k
views
6 follow
2
answers
Phenotype data for Ballgown tool
ballgown galaxy rna-seq written 16 months ago by tamrin.chowdhury40 • updated 8 months ago by rpink10
3
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0
answers
475
views
6 follow
0
answers
GALAXY_SLOTS and slashes
tophat multi-processor multi-core rna-seq written 15 months ago by apozhitkov60 • updated 15 months ago by Jennifer Hillman Jackson25k
0
votes
1
answer
2.0k
views
5 follow
1
answer
Gene Name In Cufflink/Compare/Diff
cuffdiff rna-seq written 7.7 years ago by Matteo Bovolenta10 • updated 7.7 years ago by vasu punj360
7
votes
1
answer
5.1k
views
5 follow
1
answer
3
votes
3
answers
7.7k
views
5 follow
3
answers
Unzip files on Galaxy
galaxy rna-seq written 4.2 years ago by smthorpe10 • updated 2.5 years ago by Greg Von Kuster810
7
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3
answers
1.5k
views
5 follow
3
answers
miRDeep in lastest version of Galaxy
rna-seq written 4.2 years ago by quintanamaster20 • updated 3.7 years ago by Bjoern Gruening5.1k
2
votes
1
answer
4.2k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 3.7 years ago by jingshuowang10 • updated 3.7 years ago by Bjoern Gruening5.1k
3
votes
1
answer
1.0k
views
5 follow
1
answer
3
votes
6
answers
1.7k
views
5 follow
6
answers
How to create GFF file for HT seq
bam rna-seq written 2.1 years ago by shraddha.adamane10 • updated 8 months ago by Joey Zou0
1
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0
answers
1.4k
views
5 follow
0
answers
2
votes
1
answer
925
views
5 follow
1
answer
Cummerbund visualization of expression plot
rna-seq written 19 months ago by clarkd30 • updated 16 months ago by roxy.zhang0
3
votes
6
answers
750
views
5 follow
6
answers
Jobs as gray history
rna-seq written 17 months ago by bioraihan40 • updated 16 months ago by Jennifer Hillman Jackson25k
2
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2
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606
views
5 follow
2
answers
3
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1
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575
views
5 follow
1
answer
4
votes
3
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207
views
5 follow
3
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Using Featurecounts with a custom genome/build
rna-seq custom genome featurecounts build written 4 months ago by mserafeddinsolak10 • updated 4 months ago by tiamaamihyia0
1
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2
answers
1.9k
views
2
answers
0
votes
1
answer
907
views
1
answer
Inconsistent Cuffdiff Output-Corrected Question
cufflinks rna-seq written 6.1 years ago by i b330 • updated 15 months ago by vm.higareda0
7
votes
1
answer
3.4k
views
1
answer
How do I obtain uniquely mappable reads from bowtie on galaxy?
rna-seq bowtie solid written 4.4 years ago by Jason30 • updated 4.4 years ago by Bjoern Gruening5.1k
2
votes
2
answers
3.2k
views
2
answers
How to run HTseq on the public galaxy platform?
htseq galaxy rna-seq written 4.4 years ago by Yanxiang Shi20 • updated 2.4 years ago by Jennifer Hillman Jackson25k
2
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1
answer
2.2k
views
1
answer
Filter SAM or BAM
filter galaxy rna-seq written 4.4 years ago by hsuehyuanc0 • updated 4.4 years ago by Jennifer Hillman Jackson25k
13
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2
answers
4.5k
views
2
answers
fastq files are't recognized by tools
rna-seq written 4.4 years ago by markus.wolfien50 • updated 3.8 years ago by dtabed0
4
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1
answer
2.3k
views
1
answer
1
vote
1
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1.5k
views
1
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Running TopHat locally
local tophat rna-seq written 4.2 years ago by Suzanne Gomes120
3
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1
answer
1.8k
views
1
answer
2
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2
answers
3.4k
views
2
answers
Cuffdiff Error - sort order of reads in BAMs must be the same
cuffdiff rna-seq written 3.7 years ago by francis.gandhi20 • updated 19 months ago by takshan10
0
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3
answers
904
views
3
answers
3
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0
answers
879
views
0
answers
-nan in Cuffdiff run
rna-seq written 2.8 years ago by Cory Dunn40 • updated 2.7 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
790
views
1
answer
TopHat Build in genomes
galaxy alignment tophat rna-seq written 2.5 years ago by newyasso0 • updated 2.5 years ago by christophe.habib340
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