Showing: rna-seqreset
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3
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1
answer
3.5k
views
10 follow
1
answer
Using DESeq2 inside Galaxy
deseq2 galaxy rna-seq written 2.3 years ago by marcelops20 • updated 2.3 years ago by Bjoern Gruening5.0k
4
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4
answers
1.8k
views
8 follow
4
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Disk quota at 100% when I believe it should be less than 50%
galaxy software error rna-seq written 3.1 years ago by Eric A. Wold0 • updated 22 months ago by fukunaga10
0
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1
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1.4k
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7 follow
1
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Error Running Cufflinks On Galaxy
cufflinks bowtie alignment rna-seq written 7.0 years ago by David Robinson10 • updated 7.0 years ago by Jennifer Hillman Jackson25k
10
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4
answers
1.5k
views
7 follow
4
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cufflinks-job submission failed
galaxy cufflinks rna-seq written 3.3 years ago by raj_26292020 • updated 3.3 years ago by carlos30
9
votes
6
answers
1.6k
views
7 follow
6
answers
TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 12 months ago by johanvn10 • updated 12 months ago by franklin_moreno0
5
votes
1
answer
1.6k
views
6 follow
1
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Error with cuffdiff
cuffdiff software error rna-seq written 3.1 years ago by drbrown20 • updated 3.1 years ago by Martin Čech ♦♦ 4.7k
6
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0
answers
556
views
6 follow
0
answers
TopHat not processing RNA-seq FASTQ file
rna-seq written 2.0 years ago by ang3x20 • updated 24 months ago by Jennifer Hillman Jackson25k
3
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2
answers
1.5k
views
6 follow
2
answers
Phenotype data for Ballgown tool
ballgown galaxy rna-seq written 13 months ago by tamrin.chowdhury40 • updated 5 months ago by rpink10
3
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0
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365
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6 follow
0
answers
GALAXY_SLOTS and slashes
tophat multi-processor multi-core rna-seq written 12 months ago by apozhitkov60 • updated 12 months ago by Jennifer Hillman Jackson25k
0
votes
1
answer
1.9k
views
5 follow
1
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Gene Name In Cufflink/Compare/Diff
cuffdiff rna-seq written 7.4 years ago by Matteo Bovolenta10 • updated 7.4 years ago by vasu punj360
7
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1
answer
4.9k
views
5 follow
1
answer
3
votes
3
answers
7.0k
views
5 follow
3
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Unzip files on Galaxy
galaxy rna-seq written 4.0 years ago by smthorpe10 • updated 2.3 years ago by Greg Von Kuster810
7
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3
answers
1.4k
views
5 follow
3
answers
miRDeep in lastest version of Galaxy
rna-seq written 4.0 years ago by quintanamaster20 • updated 3.4 years ago by Bjoern Gruening5.0k
2
votes
1
answer
4.1k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 3.5 years ago by jingshuowang10 • updated 3.5 years ago by Bjoern Gruening5.0k
3
votes
1
answer
879
views
5 follow
1
answer
3
votes
6
answers
1.3k
views
5 follow
6
answers
How to create GFF file for HT seq
bam rna-seq written 22 months ago by shraddha.adamane10 • updated 5 months ago by Joey Zou0
1
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0
answers
1.2k
views
5 follow
0
answers
2
votes
1
answer
733
views
5 follow
1
answer
Cummerbund visualization of expression plot
rna-seq written 16 months ago by clarkd30 • updated 13 months ago by roxy.zhang0
3
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6
answers
506
views
5 follow
6
answers
Jobs as gray history
rna-seq written 14 months ago by bioraihan40 • updated 13 months ago by Jennifer Hillman Jackson25k
2
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2
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464
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5 follow
2
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4
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3
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123
views
5 follow
3
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1
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2
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1.8k
views
2
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0
votes
1
answer
855
views
1
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Inconsistent Cuffdiff Output-Corrected Question
cufflinks rna-seq written 5.8 years ago by i b330 • updated 12 months ago by vm.higareda0
7
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1
answer
3.2k
views
1
answer
How do I obtain uniquely mappable reads from bowtie on galaxy?
rna-seq bowtie solid written 4.2 years ago by Jason30 • updated 4.2 years ago by Bjoern Gruening5.0k
2
votes
2
answers
3.0k
views
2
answers
How to run HTseq on the public galaxy platform?
htseq galaxy rna-seq written 4.2 years ago by Yanxiang Shi20 • updated 2.2 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
2.0k
views
1
answer
Filter SAM or BAM
filter galaxy rna-seq written 4.2 years ago by hsuehyuanc0 • updated 4.2 years ago by Jennifer Hillman Jackson25k
13
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2
answers
4.4k
views
2
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fastq files are't recognized by tools
rna-seq written 4.1 years ago by markus.wolfien50 • updated 3.5 years ago by dtabed0
4
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1
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2.2k
views
1
answer
1
vote
1
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1.3k
views
1
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Running TopHat locally
local tophat rna-seq written 4.0 years ago by Suzanne Gomes120
3
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1
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1.7k
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1
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2
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2
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3.1k
views
2
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Cuffdiff Error - sort order of reads in BAMs must be the same
cuffdiff rna-seq written 3.4 years ago by francis.gandhi20 • updated 16 months ago by takshan10
0
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3
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726
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3
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3
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0
answers
773
views
0
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-nan in Cuffdiff run
rna-seq written 2.5 years ago by Cory Dunn40 • updated 2.5 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
703
views
1
answer
TopHat Build in genomes
galaxy alignment tophat rna-seq written 2.2 years ago by newyasso0 • updated 2.2 years ago by christophe.habib340
1
vote
1
answer
956
views
1
answer
significant genes not shown in the scatter and volcano plots
rna-seq written 2.2 years ago by brarp061910 • updated 12 months ago by akilabioinfo0
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