Showing: rna-seqreset
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3
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1
answer
3.8k
views
10 follow
1
answer
Using DESeq2 inside Galaxy
deseq2 galaxy rna-seq written 2.4 years ago by marcelops20 • updated 2.4 years ago by Bjoern Gruening5.1k
3
votes
0
answers
420
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6 follow
0
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GALAXY_SLOTS and slashes
tophat multi-processor multi-core rna-seq written 14 months ago by apozhitkov60 • updated 14 months ago by Jennifer Hillman Jackson25k
2
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1
answer
4.4k
views
1
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Cuffcompare Or Cuffmerge
cufflinks cuffmerge rna-seq written 6.3 years ago by 杨继文210 • updated 6.3 years ago by ericliaowei@gmail.com70
13
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2
answers
4.4k
views
2
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fastq files are't recognized by tools
rna-seq written 4.3 years ago by markus.wolfien50 • updated 3.7 years ago by dtabed0
7
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1
answer
5.0k
views
5 follow
1
answer
3
votes
3
answers
7.3k
views
5 follow
3
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Unzip files on Galaxy
galaxy rna-seq written 4.1 years ago by smthorpe10 • updated 2.4 years ago by Greg Von Kuster810
7
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3
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1.4k
views
5 follow
3
answers
miRDeep in lastest version of Galaxy
rna-seq written 4.1 years ago by quintanamaster20 • updated 3.6 years ago by Bjoern Gruening5.1k
3
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1
answer
1.8k
views
1
answer
1
vote
1
answer
1.6k
views
1
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Cuffquant and cuffnorm
tuxedo ngs rna-seq written 4.0 years ago by hojjat_naderi0 • updated 4.0 years ago by Jennifer Hillman Jackson25k
2
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1
answer
4.1k
views
5 follow
1
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Building Bowtie index, failed
rna-seq alignment tophat gff written 3.6 years ago by jingshuowang10 • updated 3.6 years ago by Bjoern Gruening5.1k
1
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1
answer
1.9k
views
1
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Galaxy RSEM error
rna-seq written 3.6 years ago by h7.jung10 • updated 3.6 years ago by Jennifer Hillman Jackson25k
2
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2
answers
3.2k
views
2
answers
Cuffdiff Error - sort order of reads in BAMs must be the same
cuffdiff rna-seq written 3.6 years ago by francis.gandhi20 • updated 18 months ago by takshan10
5
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1
answer
1.7k
views
6 follow
1
answer
Error with cuffdiff
cuffdiff software error rna-seq written 3.2 years ago by drbrown20 • updated 3.2 years ago by Martin Čech ♦♦ 4.8k
2
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7
answers
2.3k
views
7
answers
1
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0
answers
696
views
0
answers
Error for TopHat
software error tophat rna-seq written 2.8 years ago by ahmetcingoz10 • updated 2.8 years ago by Jennifer Hillman Jackson25k
3
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0
answers
828
views
0
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-nan in Cuffdiff run
rna-seq written 2.7 years ago by Cory Dunn40 • updated 2.6 years ago by Jennifer Hillman Jackson25k
2
votes
2
answers
813
views
2
answers
Getting RT stops
rt mapping bowtie alignment rna-seq written 2.6 years ago by mabdelsa10
4
votes
1
answer
671
views
1
answer
upload data to galaxy from the CGhub
galaxy rna-seq written 2.6 years ago by heming_wang20 • updated 2.6 years ago by Jennifer Hillman Jackson25k
1
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2
answers
734
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2
answers
1
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0
answers
640
views
0
answers
1
vote
1
answer
991
views
1
answer
significant genes not shown in the scatter and volcano plots
rna-seq written 2.3 years ago by brarp061910 • updated 14 months ago by akilabioinfo0
1
vote
1
answer
1.9k
views
1
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sra data from ncbi
rna-seq written 2.3 years ago by 1603.neha70 • updated 2.3 years ago by Jennifer Hillman Jackson25k
1
vote
1
answer
1.4k
views
1
answer
Tophat2 index problem
tophat rna-seq written 2.3 years ago by yasser.morsy10
1
vote
1
answer
746
views
1
answer
preparing input for cummerbund
software error rna-seq written 2.3 years ago by owjih10 • updated 2.3 years ago by Jennifer Hillman Jackson25k
1
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2
answers
792
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2
answers
Error message in Tophat
rna-seq written 2.3 years ago by wcheng10
3
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1
answer
1.2k
views
1
answer
Stranded vs unstranded cufflinks
rna-seq cufflinks strand nexteraxt written 2.2 years ago by VY120 • updated 2.0 years ago by Jennifer Hillman Jackson25k
3
votes
1
answer
822
views
1
answer
HTseq runs fail
galaxy rna-seq written 2.2 years ago by gupta30 • updated 2.2 years ago by Jennifer Hillman Jackson25k
1
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1
answer
874
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1
answer
htseq-count no hits
rna-seq written 2.2 years ago by VY120 • updated 2.2 years ago by Jennifer Hillman Jackson25k
6
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0
answers
611
views
6 follow
0
answers
TopHat not processing RNA-seq FASTQ file
rna-seq written 2.1 years ago by ang3x20 • updated 2.1 years ago by Jennifer Hillman Jackson25k
1
vote
1
answer
679
views
1
answer
Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 2.0 years ago by darsha_710 • updated 2.0 years ago by Jennifer Hillman Jackson25k
3
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1
answer
940
views
5 follow
1
answer
1
vote
1
answer
460
views
1
answer
After loading up RNAseq data, what to do next?
rna-seq written 2.0 years ago by shuo.li10 • updated 2.0 years ago by Jennifer Hillman Jackson25k
2
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2
answers
1.1k
views
2
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TopHat - set metadata manually or retry auto-detection
tophat rna-seq written 2.0 years ago by avoltz30 • updated 9 months ago by Wanderer10
4
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1
answer
739
views
1
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cuffdiff conditions related question
rna-seq written 2.0 years ago by xusiyujune10 • updated 2.0 years ago by Mo Heydarian800
1
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0
answers
1.3k
views
5 follow
0
answers
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