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MultiQC Salmon output

galaxy multiqc salmon rna-seq written 10 days ago by jevanveen • 10 • updated 10 days ago by Jennifer Hillman Jackson ♦ 24k

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NGS Qc: MultiQC not recognizing FASTQC raw results from list

bam collection multiqc fastqc list written 6 weeks ago by rajeev.vikram • 0 • updated 6 weeks ago by Jennifer Hillman Jackson ♦ 24k

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MultiQC not recognising data set collection - Fix implemented at usegalaxy.org

multiqc fastqc written 4 months ago by Taamslab • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 24k

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Recent Replies

A: Cufflinks C. elegans no gene names? by Jennifer Hillman Jackson ♦ 24k
Hello, The reference annotation must include the **tss_id, gene_id, and gene_name** attributes t...
A: DESeq2 Gene IDs by Jennifer Hillman Jackson ♦ 24k
Hello, Double check the annotation file that you are using versus the attributes being counted b...
A: Job Submission Failed by Jennifer Hillman Jackson ♦ 24k
Hello, There is likely a problem with the inputs. Please review the troubleshooting and tutorial...
A: Non-coding RNA feature type/attribute by Jennifer Hillman Jackson ♦ 24k
Hello, The "ID Attribute" is used by the tool to group together annotation lines. My guess is th...
A: How to covnvert gene id to gene names by Jennifer Hillman Jackson ♦ 24k
Hello, Double check your reference annotation file (GTF or GFF3). Make sure it has the attribute...
A: Compare 2 BAM files for covarage regions by Jennifer Hillman Jackson ♦ 24k
Hello, Please see the tools in the group **NGS: DeepTools**. Example usage is covered in these t...
A: GEO SRA fastq-dump with very low mapping rate (Galaxy) by human • 0
Hey Jennifer, just to give the solution to my prevoius problem. Fastq upload files were wrong an...
A: Stitch MAF Blocks output mostly empty by mlwright • 0
Nevermind, I think I got it. Just had to upload the MAF file from UCSC rather than using the defa...
C: Running DESeq2 inside local Galaxy instance by Devon Ryan • 1.9k
Odd, I suspect that there was an error when creating the conda environment. You can try removing ...
A: why TopHat doesn't read my compressed dataset collection (Fastqsanger.gz)? -- D by Fat.eldefrawy • 0
Thank you, Jennifer. your suggestions helped me more
C: Where is Snippy? by sluro • 0
I was using the "main" UseGalaxy server. The European one has the tool. Thanks, Bjoern!
C: Barcode splitter error by Jennifer Hillman Jackson ♦ 24k
**UPDATE** This is a problem server side at Galaxy Main https://usegalaxy.org. An issue ticket h...

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