Showing: mpileupreset
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Generating Pileup With Max Depth Greater Than 8000?
mpileup written 5.0 years ago by Lauren Oldfield10 • updated 5.0 years ago by Peter Cock1.4k
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Need help with "MPileup" tool
mpileup written 4.4 years ago by charrison910 • updated 4.4 years ago by Jennifer Hillman Jackson25k
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VCF output from Mpileup tool
vcf mpileup galaxy igv pileup written 2.3 years ago by felipe_o_torquato10 • updated 2.2 years ago by Jennifer Hillman Jackson25k
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Trouble Using Bcf Tools.
mpileup bowtie alignment written 5.4 years ago by Patrick Leahy10 • updated 5.4 years ago by Jennifer Hillman Jackson25k
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pileup to vcf
galaxy mpileup vcf pileup written 3.7 years ago by charles.wray20 • updated 3 months ago by Jennifer Hillman Jackson25k
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mpileup calling every ALT <X>
mpileup galaxy written 2.2 years ago by rquigl0110 • updated 2.2 years ago by Jennifer Hillman Jackson25k
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BCFtools output tabular
samtools mpileup vcf usage tool written 3.9 years ago by fagrimal0 • updated 3.9 years ago by Jennifer Hillman Jackson25k
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"No such file or directory" when using mpileup
mpileup written 2.9 years ago by kep10 • updated 2.9 years ago by Wolfgang Maier550
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mpileup metadata problem in workflow
samtools mpileup metadata written 3.1 years ago by abogutz30 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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How To Extract Geneid From Pileup File?
bam samtools mpileup bowtie alignment written 5.1 years ago by Yan He240 • updated 5.1 years ago by Jennifer Hillman Jackson25k
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Cannot set metadata on .bcf output from mpileup
mpileup bcf tools view metadata bcf error written 3.1 years ago by Guy Reeves1.0k • updated 2.2 years ago by rquigl0110
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Mpileup Max Coverage
mpileup written 4.6 years ago by Wang, Michael30 • updated 4.6 years ago by Jennifer Hillman Jackson25k
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Getting Errors Trying To Enable Samtools_Mpileup
bam samtools mpileup written 6.6 years ago by Waldron, Michael H10 • updated 6.6 years ago by Jennifer Hillman Jackson25k
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Mpileup Tool
bam samtools mpileup gmod written 7.1 years ago by Keith Funkhouser10 • updated 7.0 years ago by Keith Funkhouser10
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Commandline Bowtie2 and variant call help.
samtools mpileup bowtie variantcall written 2.8 years ago by syrez.m0 • updated 2.8 years ago by Jennifer Hillman Jackson25k
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Filtering using BED file
filtering mpileup vcf bed file written 2.2 years ago by errityf0 • updated 2.2 years ago by Devon Ryan1.9k
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Need help with mpileup tool on Galaxy
samtools mpileup galaxy written 2.3 years ago by errityf0 • updated 2.3 years ago by Jennifer Hillman Jackson25k
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IGV read color question
mpileup igv color written 2.2 years ago by rquigl0110
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Bug in Mpileup wrapper
samtools mpileup written 3.4 years ago by marc.chakiachvili10 • updated 3.4 years ago by Jennifer Hillman Jackson25k
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How Can I Tell What Programs Are Used By A Tool?
bam samtools mpileup written 6.6 years ago by Beale, Holly (NIH/NHGRI) [F]20 • updated 6.6 years ago by Peter Cock1.4k
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mpileup fails to run
mpileup written 2.4 years ago by jannetta.steyn10
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Too few reads after VarScan on RNA-Seq data?
mpileup varscan snp tophat rna-seq written 23 months ago by frankie.north10 • updated 23 months ago by Jennifer Hillman Jackson25k
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Calling variants help
calling mpileup galaxy snps indels written 2.2 years ago by rquigl0110 • updated 2.2 years ago by bryantl90
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Having trouble viewing mpileup
mpileup written 2.3 years ago by errityf0 • updated 2.3 years ago by Jennifer Hillman Jackson25k
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MPileup output errror ALT <X> QUAL 0
mpileup written 18 months ago by edouglasrobertson0 • updated 18 months ago by Jennifer Hillman Jackson25k
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