Showing: mpileupreset
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Calling variants help
calling mpileup galaxy snps indels written 18 months ago by rquigl0110 • updated 18 months ago by bryantl90
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Cannot set metadata on .bcf output from mpileup
mpileup bcf tools view metadata bcf error written 2.5 years ago by Guy Reeves1.0k • updated 18 months ago by rquigl0110
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969
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mpileup metadata problem in workflow
samtools mpileup metadata written 2.4 years ago by abogutz30 • updated 2.4 years ago by Jennifer Hillman Jackson23k
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mpileup fails to run
mpileup written 21 months ago by jannetta.steyn10
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Mpileup Tool
bam samtools mpileup gmod written 6.4 years ago by Keith Funkhouser10 • updated 6.4 years ago by Keith Funkhouser10
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Generating Pileup With Max Depth Greater Than 8000?
mpileup written 4.3 years ago by Lauren Oldfield10 • updated 4.3 years ago by Peter Cock1.4k
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Need help with "MPileup" tool
mpileup written 3.7 years ago by charrison910 • updated 3.7 years ago by Jennifer Hillman Jackson23k
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2
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1000
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2
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"No such file or directory" when using mpileup
mpileup written 2.2 years ago by kep10 • updated 2.2 years ago by Wolfgang Maier390
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Filtering using BED file
filtering mpileup vcf bed file written 18 months ago by errityf0 • updated 18 months ago by Devon Ryan1.9k
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0
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630
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How Can I Tell What Programs Are Used By A Tool?
bam samtools mpileup written 6.0 years ago by Beale, Holly (NIH/NHGRI) [F]20 • updated 6.0 years ago by Peter Cock1.4k
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Getting Errors Trying To Enable Samtools_Mpileup
bam samtools mpileup written 5.9 years ago by Waldron, Michael H10 • updated 5.9 years ago by Jennifer Hillman Jackson23k
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Trouble Using Bcf Tools.
mpileup bowtie alignment written 4.8 years ago by Patrick Leahy10 • updated 4.7 years ago by Jennifer Hillman Jackson23k
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957
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How To Extract Geneid From Pileup File?
bam samtools mpileup bowtie alignment written 4.4 years ago by Yan He240 • updated 4.4 years ago by Jennifer Hillman Jackson23k
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1
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876
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Mpileup Max Coverage
mpileup written 4.0 years ago by Wang, Michael30 • updated 4.0 years ago by Jennifer Hillman Jackson23k
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BCFtools output tabular
samtools mpileup vcf usage tool written 3.2 years ago by fagrimal0 • updated 3.2 years ago by Jennifer Hillman Jackson23k
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625
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Bug in Mpileup wrapper
samtools mpileup written 2.7 years ago by marc.chakiachvili10 • updated 2.7 years ago by Jennifer Hillman Jackson23k
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2
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0
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Commandline Bowtie2 and variant call help.
samtools mpileup bowtie variantcall written 2.2 years ago by syrez.m0 • updated 2.2 years ago by Jennifer Hillman Jackson23k
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564
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Need help with mpileup tool on Galaxy
samtools mpileup galaxy written 19 months ago by errityf0 • updated 19 months ago by Jennifer Hillman Jackson23k
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1
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399
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Having trouble viewing mpileup
mpileup written 19 months ago by errityf0 • updated 19 months ago by Jennifer Hillman Jackson23k
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2
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VCF output from Mpileup tool
vcf mpileup galaxy igv pileup written 19 months ago by felipe_o_torquato10 • updated 19 months ago by Jennifer Hillman Jackson23k
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667
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0
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IGV read color question
mpileup igv color written 19 months ago by rquigl0110
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685
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mpileup calling every ALT <X>
mpileup galaxy written 18 months ago by rquigl0110 • updated 18 months ago by Jennifer Hillman Jackson23k
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Too few reads after VarScan on RNA-Seq data?
mpileup varscan snp tophat rna-seq written 15 months ago by frankie.north10 • updated 15 months ago by Jennifer Hillman Jackson23k
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MPileup output errror ALT <X> QUAL 0
mpileup written 10 months ago by edouglasrobertson0 • updated 10 months ago by Jennifer Hillman Jackson23k
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pileup --position in galaxy
regions samtools pileup mpileup position written 3 months ago by mor.rub0 • updated 3 months ago by Jennifer Hillman Jackson23k
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