Showing: mappingreset
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Getting RT stops
rt mapping bowtie alignment rna-seq written 2.8 years ago by mabdelsa10
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433
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4
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325
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2
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227
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Top Hat deprecation--what should I use?
hisat2 mapping star tophat rna-seq written 6 months ago by sadequr.rahman10 • updated 6 months ago by Jennifer Hillman Jackson25k
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0
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117
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error in bowtie 2 mapping
chip-seq exit code 1 bowtie mapping written 3 months ago by ars19892210 • updated 3 months ago by Martin Čech ♦♦ 4.9k
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903
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Need help with "Tophat2" tool
referencegenome yeast mapping spliced data tophat2 written 4.3 years ago by martine.collart0 • updated 4.3 years ago by Jennifer Hillman Jackson25k
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Map with Bowtie for Illumina
illumina bowtie mapping written 4.3 years ago by tima0 • updated 4.3 years ago by Jennifer Hillman Jackson25k
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1
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How can I merge two single-end mapping data
chip-seq mapping bowtie single end merge written 4.1 years ago by zhhxu90 • updated 4.1 years ago by Bjoern Gruening5.1k
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1
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0
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827
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Setting up a BLAST Tool on Galaxy via Python
local blast cloud mapping written 3.7 years ago by rlee0350 • updated 3.7 years ago by Jennifer Hillman Jackson25k
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1
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744
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Viral mapping of new strains within host samples
galaxy viral mapping written 3.6 years ago by ehodzic10 • updated 3.6 years ago by Martin Čech ♦♦ 4.9k
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1
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difference between tophat2 and tophat for illumina
mapping gtf tophat tophat2 written 3.6 years ago by ajmaninisha30 • updated 3.6 years ago by Bjoern Gruening5.1k
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2
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930
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0
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2
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876
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error tool Bowtie2
bowtie2 mapping ucsc ensembl written 3.1 years ago by Noè0
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2
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955
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2
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Making a Temporary Directory in an XML File
mapping bowtie written 3.0 years ago by mccoykg80 • updated 3.0 years ago by Bjoern Gruening5.1k
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646
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2
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7
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1.4k
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7
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0
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1
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3.8k
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Mouse mm10 genome
mapping mm10 genome written 2.5 years ago by VY120 • updated 2.5 years ago by Jennifer Hillman Jackson25k
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1
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888
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1
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gene names from ucsc id
cuffdiff rnaseq tophat mapping written 2.4 years ago by 1603.neha70 • updated 2.4 years ago by Jennifer Hillman Jackson25k
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1.6k
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1
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0
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1
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779
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Adding Reference genome to STAR local galaxy
galaxy star mapping rna-seq written 2.2 years ago by onspotproductions40 • updated 2.2 years ago by Jennifer Hillman Jackson25k
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1
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0
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1
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0
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2
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636
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unable to run tophat on trim galore processed reads
trimgalore mapping tophat written 23 months ago by computationalvarun20 • updated 23 months ago by nishashoolini.phd0
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2.8k
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2
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Mapping quality plot of BAM file
quality mapping plot written 21 months ago by vebaev130 • updated 21 months ago by y.hoogstrate460
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1
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890
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6 follow
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Bowtie2 not working
bowtie2 dna-seq software error mapping ngs written 21 months ago by anchalkar.kaushal200740 • updated 21 months ago by Jennifer Hillman Jackson25k
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693
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2
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1
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0
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674
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0
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1
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1
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661
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TopHat splice junctions
mapping unexpected-results tophat rna-seq written 17 months ago by athbal10 • updated 17 months ago by Jennifer Hillman Jackson25k
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1
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288
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1
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commonly used mapping mode parameters on lastz
mode mapping parameters lastz written 15 months ago by kara.powder0 • updated 15 months ago by Jennifer Hillman Jackson25k
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2
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663
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2
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Mismatch penalty in BWA
mapping alignment bwa written 13 months ago by Juan Ledesma0
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1
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254
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1
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Zebrafish Genome on HISAT2
danrer usegalaxy.org indexes ucsc mapping written 8 months ago by jacantu0 • updated 8 months ago by Jennifer Hillman Jackson25k
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1
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267
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1
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Tophat Error for SRA accessions
rna-seq mapping tophat error written 8 months ago by chandrugcg_7710 • updated 8 months ago by Jennifer Hillman Jackson25k
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573
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bowtie vs bowtie2
bowtie2 mapping bowtie bwa bwa-mem written 7 months ago by jenyka_dm10
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401
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1
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RNA-star mapped.bam problems
error mapping metadata star rna-seq written 7 months ago by a.walne40 • updated 7 months ago by Jennifer Hillman Jackson25k
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