job-details Posts

A: Workflow inserting input name to output file by Mo Heydarian ♦ 820
Hi, Try using the 'Collection Column Join' tool. This tool will combine files based on a common ...
A: Jobs don't run, workflows don't initiate by CF • 0
Hi Martin, Unfortunately, I don't think that applies here, as I am using a local galaxy instance...
A: HOW TO REALIGN INDELS by Jennifer Hillman Jackson ♦ 25k
Hello, If you use **Freebayes** to do the variant calling, realignment is performed by that tool...
A: Jobs don't run, workflows don't initiate by Martin Čech ♦♦ 4.8k
This was a bug on our side, which has been fixed today. All the queued jobs should be finished or...
A: RNAseq: RNA STAR ---Mapping to a viral genome by Jennifer Hillman Jackson ♦ 25k
Hello, 1. RNA STAR expects the input fastq data to be spliced (RNA). BWA expects the input to be...
A: Corrdinates from ORFs on transcripts by Jennifer Hillman Jackson ♦ 25k
Hello, These ORF fasta sequences can be mapped back to the reference genome to obtain the coordi...
A: NGS Assembly tutorial sample data question by Jennifer Hillman Jackson ♦ 25k
Hello, Yes, map the data then use a tool such as **NGS: DeepTools > bamPEFragmentSize Estimat...
A: Why shouldn't you ever compare TPM values across samples? by Jennifer Hillman Jackson ♦ 25k
Hello, Using count data directly is more scientifically accurate. Comparing statistics based on ...
A: Error - Heatmap generation / visualization from RNA-seq data using DESeq2 workfl by Jennifer Hillman Jackson ♦ 25k
Hello, Charts have been updated and moved to a new section of the GUI. Try using the Heatmap fun...
A: Uploaded files still being imported ito the history after 48h by f.laforets • 10
Hi Martin, Thanks for your help. I will import it again, then! Best wishes, Flo
A: Uploaded files still being imported ito the history after 48h by Martin Čech ♦♦ 4.8k
Hi Flo, we were upgrading usegalaxy.org to a new release 2 days ago and one of the handlers ended...
C: Error in docker when using smtp_server by gb • 30
Thanks for the response, I will try to run galaxy outside docker to check if it is a docker or ga...

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