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Ipython on local galaxy

ipython written 2.3 years ago by cristianrohr768 • 20

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Are DIY algorithms possible? Any shell?

ipython galaxy jupyter notebook rna-seq written 23 months ago by dragon28 • 30

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News: Announcement: Galaxy IPython Integration - interactive programming in Galaxy

ipython docker galaxy news written 4.2 years ago by Bjoern Gruening ♦ 5.1k • updated 4.2 years ago by Istvan Albert ♦ 250

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Interactive Environments on Galaxy: data import/export with Galaxy history

ipython galaxy main galaxy jupyter written 8 months ago by inutano • 10 • updated 7 months ago by Jennifer Hillman Jackson ♦ 25k

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News: Galaxy Docker Image (v 15.03)

ipython news galaxy docker release written 3.6 years ago by Bjoern Gruening ♦ 5.1k

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Error in running jupyter on galaxy in local system

ipython local galaxy config jupyter written 9 months ago by sabu.george • 0

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Autobiographer to phong.khamdak.hoada.idong.15 • 0
Scholar to Martin Čech ♦♦ 4.9k
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Scholar to Jennifer Hillman Jackson ♦ 25k
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Popular Question to Jennifer Hillman Jackson ♦ 25k

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A: VCF Combine, missing chromosomes?! by Jennifer Hillman Jackson ♦ 25k
Hello, Ok, I finally figured out the problem. It is required that the VCF's have a `##contig=` t...
C: Workflow inserting input name to output file by johnathanwong4 • 0
Thanks. The tools you mentioned didn't work for my specific case but I used them as inspiration t...
A: is the VCF filtering function working? by Jennifer Hillman Jackson ♦ 25k
Hello, Try using **SnpSift Filter** instead. For "Annotation_Impact = HIGH", the *filter crite...
C: MySQL db connection error or ? by feliyon • 10
Since my db has user and pass, I'll guess it should go full line like: 'mysql://admin:passss@loc...
A: select a specific hits from XML output by Jennifer Hillman Jackson ♦ 25k
Hi, The tool **Parse blast XML** is where to start. This doesn't take any additional parameters ...
A: RNAseq exon count by Jennifer Hillman Jackson ♦ 25k
Hello, You'll need to perform differential expression analysis at the transcript level (not gene...
A: Exporting workflow from tool shed respository by Jennifer Hillman Jackson ♦ 25k
Hello, This is an older repository with some custom tools, so it might not work under newer Gala...
C: how prepare File containing a mapping of transcripts to genes under Salmon by Jennifer Hillman Jackson ♦ 25k
If you can reproduce the error at https://usegalaxy.org, the bug report can be submitted.
C: publicly available traces/logs by francieli.zanon-boito • 20
Hello, Martin, thanks for your reply and I'm sorry about my delay in replying. I understand how ...
C: how prepare File containing a mapping of transcripts to genes under Salmon by Leila Kian • 10
yes, I have filtered two column of transcriptome file to be coincident exactly and filterd transc...
A: MySQL db connection error or ? by Wolfgang Maier • 590
try enclosing your settings in single quotes, e.g.: database_connection: 'mysql:///galax_db?...
C: Jobs taking forever and not running by bscarpe • 0
Thanks Jen! This is super helpful

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