Showing: hisat2reset
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3
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Is HISAT2 working in GALAXY?
hisat2 galaxy written 2.3 years ago by cooleel0
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built-in genome for HISAT2 not available
hisat2 indexes genome written 2.2 years ago by jchou0 • updated 2.1 years ago by Jennifer Hillman Jackson24k
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648
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2
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873
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Cuffquant errors after using HISAT2
cuffquant hisat2 cufflinks galaxy rna-seq written 23 months ago by ali.saberi920 • updated 23 months ago by rkp2120
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937
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0
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598
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HISAT2 path problem (I think)
hisat2 samtools ubuntu path written 15 months ago by vaughandy10 • updated 15 months ago by Jennifer Hillman Jackson24k
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1
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523
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0
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3
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705
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1
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HISAT2 gzip: input_r.fastq.gz: not in gzip format
hisat2 gzip rna-seq written 11 months ago by testtoolshed30 • updated 11 months ago by Jennifer Hillman Jackson24k
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386
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1
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0
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1
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177
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HISAT2 job not running
hisat2 rna-seq written 10 months ago by s15328970 • updated 10 months ago by Jennifer Hillman Jackson24k
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414
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Which reference to map against for RNA-Seq using HISAT2
hisat2 rna-seq written 6 months ago by skhan30 • updated 6 months ago by Jennifer Hillman Jackson24k
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1
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241
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RNA STAR job error
hisat2 input rna-seq job error written 6 months ago by k.makwana20 • updated 6 months ago by Jennifer Hillman Jackson24k
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1
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201
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Job execution delays due to input dataset states
hisat2 metadata jobs tophat queue written 6 months ago by lippsdd0 • updated 6 months ago by Jennifer Hillman Jackson24k
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1
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244
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1
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RNA Star: Problem with tool
hisat2 rnastar galaxy tophat rna-seq written 6 months ago by wcheng10 • updated 6 months ago by Jennifer Hillman Jackson24k
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1
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344
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1
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Stringtie Deseq2/EdgeR count tables all zero
hisat2 stringtie rna-seq deseq2 written 5 months ago by scholtz60 • updated 5 months ago by Jennifer Hillman Jackson24k
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438
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variable, low alignment rates with HISAT2
hisat2 alignment rna-seq written 5 months ago by stephanie.major10 • updated 5 months ago by ellascottgm0
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2
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182
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RNA-Seq Alignment too Big for Galaxy?
hisat2 rnastar rna-seq star hisat written 5 months ago by Newbie0 • updated 5 months ago by Jennifer Hillman Jackson24k
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1
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176
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Matched error with cuffdiff
cuffdiff hisat2 galaxy rna-seq error written 5 months ago by annet.kyomuhangi10 • updated 5 months ago by Jennifer Hillman Jackson24k
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122
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0
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198
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0
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94
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HISAT2/TOPHAT alignment to a Rabbit Genome
hisat2 rabbit alignment tophat written 3 months ago by deemergd920 • updated 3 months ago by Jennifer Hillman Jackson24k
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83
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0
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1
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160
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0
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1
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129
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1
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0
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1
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121
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How to prepare FastQ files for HISAT2
hisat2 rna-seq alignment fastq written 11 weeks ago by skhan30 • updated 10 weeks ago by Jennifer Hillman Jackson24k
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83
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HISAT2 soft clipping
hisat2 usegalaxy.org 2.1.0 software error written 7 weeks ago by hermane0 • updated 7 weeks ago by Jennifer Hillman Jackson24k
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63
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Empty data result from Cufflinks
hisat2 custom cufflinks gtf genome written 7 weeks ago by a.walne20 • updated 7 weeks ago by Jennifer Hillman Jackson24k
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73
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A tool is marked deprecated, should I use it?
hisat2 tutorials tophat queue rna-seq written 5 weeks ago by theodorcrispin0 • updated 5 weeks ago by jevanveen10
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0
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0
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Job Submission Failed
hisat2 input salmon software error rna-seq written 28 days ago by cjmoor20 • updated 26 days ago by Jennifer Hillman Jackson24k
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85
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Non-coding RNA feature type/attribute
hisat2 htseq-count attribute gff3 htseq written 27 days ago by exd50480 • updated 26 days ago by Jennifer Hillman Jackson24k
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1
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59
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Problem with Hisat2
bam hisat2 alignment rna-seq written 26 days ago by rptiluswatson0 • updated 25 days ago by Jennifer Hillman Jackson24k
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