Showing: hisat2reset
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variable, low alignment rates with HISAT2
hisat2 alignment rna-seq written 8 months ago by stephanie.major10 • updated 8 months ago by ellascottgm0
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Empty data result from Cufflinks
hisat2 custom cufflinks gtf genome written 4 months ago by a.walne40 • updated 4 months ago by Jennifer Hillman Jackson25k
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Top Hat deprecation--what should I use?
hisat2 mapping star tophat rna-seq written 3 months ago by sadequr.rahman10 • updated 3 months ago by Jennifer Hillman Jackson25k
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Is HISAT2 working in GALAXY?
hisat2 galaxy written 2.5 years ago by cooleel0
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built-in genome for HISAT2 not available
hisat2 indexes genome written 2.4 years ago by jchou0 • updated 2.4 years ago by Jennifer Hillman Jackson25k
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Cuffquant errors after using HISAT2
cuffquant hisat2 cufflinks galaxy rna-seq written 2.1 years ago by ali.saberi920 • updated 2.1 years ago by rkp2120
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HISAT2 path problem (I think)
hisat2 samtools ubuntu path written 18 months ago by vaughandy10 • updated 18 months ago by Jennifer Hillman Jackson25k
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HISAT2 gzip: input_r.fastq.gz: not in gzip format
hisat2 gzip rna-seq written 14 months ago by testtoolshed30 • updated 14 months ago by Jennifer Hillman Jackson25k
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HISAT2 job not running
hisat2 rna-seq written 12 months ago by s15328970 • updated 12 months ago by Jennifer Hillman Jackson25k
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Which reference to map against for RNA-Seq using HISAT2
hisat2 rna-seq written 9 months ago by skhan40 • updated 9 months ago by Jennifer Hillman Jackson25k
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RNA STAR job error
hisat2 input rna-seq job error written 9 months ago by k.makwana20 • updated 9 months ago by Jennifer Hillman Jackson25k
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Job execution delays due to input dataset states
hisat2 metadata jobs tophat queue written 9 months ago by lippsdd0 • updated 9 months ago by Jennifer Hillman Jackson25k
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RNA Star: Problem with tool
hisat2 rnastar galaxy tophat rna-seq written 9 months ago by wcheng10 • updated 9 months ago by Jennifer Hillman Jackson25k
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Stringtie Deseq2/EdgeR count tables all zero
hisat2 stringtie rna-seq deseq2 written 8 months ago by scholtz60 • updated 8 months ago by Jennifer Hillman Jackson25k
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RNA-Seq Alignment too Big for Galaxy?
hisat2 rnastar rna-seq star hisat written 8 months ago by Newbie0 • updated 8 months ago by Jennifer Hillman Jackson25k
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Matched error with cuffdiff
cuffdiff hisat2 galaxy rna-seq error written 8 months ago by annet.kyomuhangi10 • updated 8 months ago by Jennifer Hillman Jackson25k
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HISAT2/TOPHAT alignment to a Rabbit Genome
hisat2 rabbit alignment tophat written 6 months ago by deemergd920 • updated 6 months ago by Jennifer Hillman Jackson25k
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How to prepare FastQ files for HISAT2
hisat2 rna-seq alignment fastq written 5 months ago by skhan40 • updated 5 months ago by Jennifer Hillman Jackson25k
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HISAT2 soft clipping
hisat2 usegalaxy.org 2.1.0 software error written 4 months ago by hermane0 • updated 4 months ago by Jennifer Hillman Jackson25k
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A tool is marked deprecated, should I use it?
hisat2 tutorials tophat queue rna-seq written 4 months ago by theodorcrispin0 • updated 4 months ago by jevanveen10
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Job Submission Failed
hisat2 input salmon software error rna-seq written 3 months ago by cjmoor20 • updated 3 months ago by Jennifer Hillman Jackson25k
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