Showing: hisat2reset
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RNA-STAR Failing using hg38 but works for hg19
hisat2 rna-seq usage memory star written 6 weeks ago by aklie0 • updated 6 weeks ago by Jennifer Hillman Jackson25k
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RNA STAR error
rna star hisat2 memory-error star written 8 weeks ago by theodorcrispin0 • updated 8 weeks ago by Jennifer Hillman Jackson25k
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HISAT2 output error
hisat2 rna-seq written 9 weeks ago by carrollc20
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Samtools error assoicated with multiple mapping tools
hisat2 galaxy bwa written 11 weeks ago by gkuffel22170 • updated 10 weeks ago by Jennifer Hillman Jackson25k
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Hitsat2: Spliced alignment options
hisat2 galaxy gtf annotation rna-seq written 10 weeks ago by audrey.mohr0 • updated 10 weeks ago by Jennifer Hillman Jackson25k
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Top Hat deprecation--what should I use?
hisat2 mapping star tophat rna-seq written 11 weeks ago by sadequr.rahman10 • updated 11 weeks ago by Jennifer Hillman Jackson25k
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Problem with Hisat2
bam hisat2 alignment rna-seq written 11 weeks ago by rptiluswatson0 • updated 11 weeks ago by Jennifer Hillman Jackson25k
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Job Submission Failed
hisat2 input salmon software error rna-seq written 12 weeks ago by cjmoor20 • updated 11 weeks ago by Jennifer Hillman Jackson25k
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Non-coding RNA feature type/attribute
hisat2 htseq-count attribute gff3 htseq written 12 weeks ago by exd50480 • updated 11 weeks ago by Jennifer Hillman Jackson25k
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A tool is marked deprecated, should I use it?
hisat2 tutorials tophat queue rna-seq written 3 months ago by theodorcrispin0 • updated 3 months ago by jevanveen10
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Empty data result from Cufflinks
hisat2 custom cufflinks gtf genome written 3 months ago by a.walne20 • updated 3 months ago by Jennifer Hillman Jackson25k
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HISAT2 soft clipping
hisat2 usegalaxy.org 2.1.0 software error written 3 months ago by hermane0 • updated 3 months ago by Jennifer Hillman Jackson25k
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How to prepare FastQ files for HISAT2
hisat2 rna-seq alignment fastq written 4 months ago by skhan40 • updated 4 months ago by Jennifer Hillman Jackson25k
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HISAT2/TOPHAT alignment to a Rabbit Genome
hisat2 rabbit alignment tophat written 5 months ago by deemergd920 • updated 5 months ago by Jennifer Hillman Jackson25k
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Matched error with cuffdiff
cuffdiff hisat2 galaxy rna-seq error written 7 months ago by annet.kyomuhangi10 • updated 7 months ago by Jennifer Hillman Jackson25k
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RNA-Seq Alignment too Big for Galaxy?
hisat2 rnastar rna-seq star hisat written 7 months ago by Newbie0 • updated 7 months ago by Jennifer Hillman Jackson25k
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variable, low alignment rates with HISAT2
hisat2 alignment rna-seq written 7 months ago by stephanie.major10 • updated 7 months ago by ellascottgm0
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Stringtie Deseq2/EdgeR count tables all zero
hisat2 stringtie rna-seq deseq2 written 7 months ago by scholtz60 • updated 7 months ago by Jennifer Hillman Jackson25k
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RNA Star: Problem with tool
hisat2 rnastar galaxy tophat rna-seq written 8 months ago by wcheng10 • updated 8 months ago by Jennifer Hillman Jackson25k
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Job execution delays due to input dataset states
hisat2 metadata jobs tophat queue written 8 months ago by lippsdd0 • updated 8 months ago by Jennifer Hillman Jackson25k
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RNA STAR job error
hisat2 input rna-seq job error written 8 months ago by k.makwana20 • updated 8 months ago by Jennifer Hillman Jackson25k
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Which reference to map against for RNA-Seq using HISAT2
hisat2 rna-seq written 8 months ago by skhan40 • updated 8 months ago by Jennifer Hillman Jackson25k
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