Showing: gtfreset
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181
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Empty data result from Cufflinks
hisat2 custom cufflinks gtf genome written 6 months ago by a.walne40 • updated 6 months ago by Jennifer Hillman Jackson25k
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307
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converting .gff file to .gtf
rna-seq gtf annotation gff3 gff written 4 months ago by kudzu10 • updated 4 months ago by Jennifer Hillman Jackson25k
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Need help with "Stitch MAF blocks" tool
maf galaxy gtf stitch-maf-blocks bed written 4.2 years ago by athonysmith10 • updated 4.2 years ago by Jennifer Hillman Jackson25k
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Is this correct way ??
genomes cufflinks gtf identifiers rna-seq written 4.1 years ago by prashanth.klancy0 • updated 4.1 years ago by Jennifer Hillman Jackson25k
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0
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Problems with the annotation tool on cufflinks
input cufflinks gtf tool fastq written 4.0 years ago by jcoelhosilveira0 • updated 4.0 years ago by Jennifer Hillman Jackson25k
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GTF file is not recognized
inputs cufflinks gtf referencedata rna-seq written 4.0 years ago by jcoelhosilveira0 • updated 4.0 years ago by Jennifer Hillman Jackson25k
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hg38 GFF3/GTF source
cuffdiff gtf rnaseq gff3 written 3.6 years ago by danderson0
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difference between tophat2 and tophat for illumina
mapping gtf tophat tophat2 written 3.6 years ago by ajmaninisha30 • updated 3.6 years ago by Bjoern Gruening5.1k
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GTF no "view in IGV local" option?
gtf igv written 3.2 years ago by vebaev130 • updated 3.2 years ago by Jennifer Hillman Jackson25k
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969
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A question of concept?
records gtf bed written 2.9 years ago by syrez.m0 • updated 2.9 years ago by Jennifer Hillman Jackson25k
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2
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805
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2
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0
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GTF to FASTA
fasta gtf rna-seq written 2.4 years ago by charbel.feghaly0 • updated 2.4 years ago by Jennifer Hillman Jackson25k
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721
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0
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1
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700
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Problems with annotation file
input cufflinks gtf annotation rna-seq written 2.1 years ago by juliaquingo0 • updated 2.1 years ago by Jennifer Hillman Jackson25k
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805
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Reference annotation GFT GFF3 problem with tool HISAT
input gtf gff3 format hisat written 2.0 years ago by tran_tim10 • updated 2.0 years ago by Jennifer Hillman Jackson25k
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818
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Add Missing Attributes to GTF
ferret gtf rna-seq written 2.0 years ago by rb0
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gff to gtf conversion
rna-seq gtf tophat gff written 23 months ago by computationalvarun20 • updated 17 months ago by Guy Reeves1.0k
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Gene annotation for cuffdiff/cufflink
cuffdiff cufflinks gtf igenomes ucsc written 20 months ago by hjen0 • updated 20 months ago by Jennifer Hillman Jackson25k
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528
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snpEff gene names
gff gtf annotation gff3 snpeff written 18 months ago by anjeetjhutty0 • updated 18 months ago by Jennifer Hillman Jackson25k
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1
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774
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Problem when running read cufflinks
mismatch cufflinks gtf reference rna-seq written 15 months ago by PRJNA3485340 • updated 6 weeks ago by Jennifer Hillman Jackson25k
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490
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Simple question please...how to generate BED and GFF files...
rna-seq gtf bed gff written 15 months ago by profjdyme10 • updated 15 months ago by Devon Ryan1.9k
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360
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GTF for hg18
cuffdiff gtf tophat written 14 months ago by jacox10 • updated 14 months ago by Jennifer Hillman Jackson25k
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0
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710
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gtf files for xenopus in galaxy instance
gtf test-tablebrower xentro9 ucsc written 13 months ago by shamsher jagat590 • updated 13 months ago by Jennifer Hillman Jackson25k
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GFF3 file (source: BRAD) incompatibilities
gff3 formatting error gtf star rna-seq written 13 months ago by dejong.grant0 • updated 12 months ago by Jennifer Hillman Jackson25k
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