Showing: gatkreset
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GATK indel realigner using custom reference
indel realigner custom reference gatk written 4.2 years ago by laura0 • updated 2.2 years ago by vignes.gangboard0
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How to use GATK on Galaxy
gatk help written 3.6 years ago by hachemi.zeraia10 • updated 3.6 years ago by Guy Reeves1.0k
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Problem with Refreence Genome in Gatk Tools
referncegenome gatk galaxy gatktools written 4.0 years ago by mltlbrt10 • updated 3.2 years ago by regina.casanova.900
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Realigner Target Creator in GATKtools
realigner realigner target creator gatk gatktools written 3.9 years ago by mltlbrt10 • updated 3.0 years ago by marcosp0
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issue with realigner target creator
gatk realigner target creator written 3.8 years ago by BC35770 • updated 3.8 years ago by Daniel Blankenberg ♦♦ 1.7k
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Gatk - Base Recalibrator
gatk written 4.7 years ago by Bolduc, Francois10 • updated 4.7 years ago by Geraldine Van der Auwera40
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GATK pipeline for WGS samples
gatk illumina wgs written 2.5 years ago by bsmith0304650 • updated 2.5 years ago by Jennifer Hillman Jackson25k
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7 follow
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GATK (deprecated tools)
gatk galaxy written 19 months ago by apozhitkov60 • updated 5 months ago by gintotomticket0
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Galaxy GATK 2 installation error
gatk galaxy software error written 4.4 years ago by do kadya130 • updated 4.4 years ago by Bjoern Gruening5.1k
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Variant Annotation In Gatk Tools
gatk written 5.1 years ago by Yan He240 • updated 5.1 years ago by Jennifer Hillman Jackson25k
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6 follow
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GATK in Galaxy Main
freebayes gatk galaxy tools main written 2.8 years ago by David Wilson30 • updated 2.8 years ago by Jennifer Hillman Jackson25k
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Problem with RealignerTargetCreator in the CloudMap workflow
cloudmap gatk realignertargetcreator written 3.8 years ago by jope130710 • updated 3.7 years ago by Daniel Blankenberg ♦♦ 1.7k
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contig order b37
gatk alignment bwa written 3.0 years ago by jane190 • updated 3.0 years ago by Jennifer Hillman Jackson25k
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GATK Haplotype Caller
gatk galaxy written 3.5 years ago by ecekartal890 • updated 3.5 years ago by Jennifer Hillman Jackson25k
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Mark Duplicate Reads Error- "Value was put into PairInfoMap more than once"
gatk bwa-mem written 3.1 years ago by JP20 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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GATK pipeline / Mutect
gatk mutect written 2.9 years ago by Bogdan Tanasa20 • updated 2.9 years ago by Jennifer Hillman Jackson25k
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Gatk Tools: Other Genome Available?
gatk written 6.5 years ago by Jean JAUBERT10 • updated 6.5 years ago by Jennifer Hillman Jackson25k
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GATK workflow error
gatk galaxy software error workflow written 3.9 years ago by scherra0 • updated 3.9 years ago by Jennifer Hillman Jackson25k
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GATK2 tools installation
local galaxy gatk written 3.3 years ago by Marc30
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GATK Select Variants Reference Genome
custom gatk genome select variants build written 23 months ago by peve0 • updated 18 months ago by Guy Reeves1.0k
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Base Recalibration Tool On Usegalaxy
gatk written 4.5 years ago by KS40 • updated 4.5 years ago by Bjoern Gruening5.1k
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7 follow
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GATK 3 wrapper
gatk written 3.4 years ago by christophe.habib340
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Unified Genotyper in GATK issue
gatk written 4.0 years ago by anniekat0 • updated 4.0 years ago by Bjoern Gruening5.1k
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Question About The Gatk Tools
gatk written 7.2 years ago by Hong, Xiaojing10 • updated 7.2 years ago by Daniel Blankenberg ♦♦ 1.7k
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GATK: Unified Genotyper Error
typeerror gatk galaxy written 3.8 years ago by marcoalbuquerque.sfu50 • updated 3.7 years ago by Jennifer Hillman Jackson25k
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994
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