Showing: gatkreset
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0
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27
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How can I index a file with tabix?
freebayes galaxy gatk vcf variant written 9 days ago by eennadi0 • updated 8 days ago by Jennifer Hillman Jackson23k
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1
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34
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0
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1
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28
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fastQC results of WGS data
wgs gatk fastqc data quality variant written 11 days ago by 153244562970 • updated 10 days ago by Jennifer Hillman Jackson23k
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3
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135
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3
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Unified Genotyper error
custom gatk genome sort annotation written 3 months ago by viktoria.evdokimova30 • updated 3 months ago by Jennifer Hillman Jackson23k
1
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1
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151
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1
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0
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4
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663
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4
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GATK Select Variants Reference Genome
custom gatk genome select variants build written 14 months ago by peve0 • updated 9 months ago by Guy Reeves1.0k
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1
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182
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1
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Regarding program running in galaxy
gatk job error written 9 months ago by supinderkr0 • updated 9 months ago by Jennifer Hillman Jackson23k
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11
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1.5k
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11
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0
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1
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419
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1
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GATK in galaxy
gatk galaxy written 12 months ago by jeevanbio70 • updated 12 months ago by Jennifer Hillman Jackson23k
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1
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394
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1
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GATK and c. elegans
gatk dbsnp c elegans written 12 months ago by peadams0 • updated 12 months ago by Jennifer Hillman Jackson23k
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1
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290
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1
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GATK tools and reference genomes
gatk written 13 months ago by anamabrantesc0 • updated 13 months ago by Jennifer Hillman Jackson23k
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1
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420
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1
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Realign_Target_Creator error running
gatk galaxy realign_target_creator written 13 months ago by abedkurdi100 • updated 13 months ago by Jennifer Hillman Jackson23k
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434
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3
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0
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1.4k
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5 follow
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0
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1
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413
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1
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Realigner Target Creator will not run?
sorting realignertargetcreator genome gatk snp written 15 months ago by frankie.north10 • updated 15 months ago by Jennifer Hillman Jackson23k
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3
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2.2k
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3
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GATK indel realigner using custom reference
indel realigner custom reference gatk written 3.4 years ago by laura0 • updated 17 months ago by vignes.gangboard0
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1
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451
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1
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SelectVariants and JEXL
gatk jexl selectvariants written 19 months ago by petersam0 • updated 19 months ago by Jennifer Hillman Jackson23k
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1
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400
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1
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0
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2
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506
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Count Covariates GATK error
gatk snp written 21 months ago by up6522140
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1
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924
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1
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GATK pipeline for WGS samples
gatk illumina wgs written 21 months ago by bsmith0304650 • updated 21 months ago by Jennifer Hillman Jackson23k
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4
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881
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6 follow
4
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GATK 3 wrapper
gatk written 2.7 years ago by christophe.habib340
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1
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1
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GATK pipeline / Mutect
gatk mutect written 2.1 years ago by Bogdan Tanasa20 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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1
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3
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4
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893
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contig order b37
gatk alignment bwa written 2.2 years ago by jane190 • updated 2.2 years ago by Jennifer Hillman Jackson23k
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1.3k
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Realigner Target Creator in GATKtools
realigner realigner target creator gatk gatktools written 3.2 years ago by mltlbrt10 • updated 2.3 years ago by marcosp0
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753
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3
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925
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Mark Duplicate Reads Error- "Value was put into PairInfoMap more than once"
gatk bwa-mem written 2.3 years ago by JP20 • updated 2.3 years ago by Jennifer Hillman Jackson23k
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714
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Problem with installation GATK
missing tool dependencies package picard gatk written 2.3 years ago by No√®0 • updated 2.3 years ago by Jennifer Hillman Jackson23k
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596
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1
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galaxy doesn't recognise dbSNP file I uploaded
gatk written 2.4 years ago by henryrobins30 • updated 2.4 years ago by Jennifer Hillman Jackson23k
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1
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658
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1
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Import .fasta dataset to NGS: GATK
gatk fasta written 2.5 years ago by regina.casanova.900 • updated 2.5 years ago by Jennifer Hillman Jackson23k
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561
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8
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6 follow
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2
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1.6k
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Problem with Refreence Genome in Gatk Tools
referncegenome gatk galaxy gatktools written 3.3 years ago by mltlbrt10 • updated 2.5 years ago by regina.casanova.900
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2
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0
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0
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814
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GATK2 tools installation
local galaxy gatk written 2.6 years ago by Marc30
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