Showing: gatkreset
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5
votes
4
answers
1.0k
views
7 follow
4
answers
GATK 3 wrapper
gatk written 3.3 years ago by christophe.habib340
6
votes
3
answers
1.3k
views
7 follow
3
answers
GATK (deprecated tools)
gatk galaxy written 19 months ago by apozhitkov60 • updated 4 months ago by gintotomticket0
8
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5
answers
1.9k
views
6 follow
5
answers
7
votes
2
answers
1.3k
views
6 follow
2
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GATK in Galaxy Main
freebayes gatk galaxy tools main written 2.7 years ago by David Wilson30 • updated 2.7 years ago by Jennifer Hillman Jackson25k
3
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0
answers
2.0k
views
5 follow
0
answers
0
votes
3
answers
2.5k
views
3
answers
GATK indel realigner using custom reference
indel realigner custom reference gatk written 4.1 years ago by laura0 • updated 2.1 years ago by vignes.gangboard0
2
votes
2
answers
1.5k
views
2
answers
Realigner Target Creator in GATKtools
realigner realigner target creator gatk gatktools written 3.9 years ago by mltlbrt10 • updated 2.9 years ago by marcosp0
2
votes
11
answers
1.9k
views
11
answers
4
votes
3
answers
348
views
3
answers
Unified Genotyper error
custom gatk genome sort annotation written 11 months ago by viktoria.evdokimova30 • updated 11 months ago by Jennifer Hillman Jackson25k
3
votes
1
answer
234
views
1
answer
0
votes
2
answers
1.8k
views
2
answers
Problem with Refreence Genome in Gatk Tools
referncegenome gatk galaxy gatktools written 4.0 years ago by mltlbrt10 • updated 3.2 years ago by regina.casanova.900
2
votes
1
answer
852
views
1
answer
What is the version of GATK in galaxy?
gatk written 4.0 years ago by pes121740 • updated 3.9 years ago by Bjoern Gruening5.1k
2
votes
1
answer
1.3k
views
1
answer
Problem with RealignerTargetCreator in the CloudMap workflow
cloudmap gatk realignertargetcreator written 3.7 years ago by jope130710 • updated 3.7 years ago by Daniel Blankenberg ♦♦ 1.7k
3
votes
1
answer
1.2k
views
1
answer
Mark Duplicate Reads Error- "Value was put into PairInfoMap more than once"
gatk bwa-mem written 3.0 years ago by JP20 • updated 3.0 years ago by Jennifer Hillman Jackson25k
0
votes
4
answers
1.0k
views
4
answers
GATK Select Variants Reference Genome
custom gatk genome select variants build written 22 months ago by peve0 • updated 17 months ago by Guy Reeves1.0k
2
votes
2
answers
198
views
2
answers
GATK 4 tool?
gatk galaxy gatk4 written 3 months ago by alanari20
1
vote
2
answers
1.0k
views
2
answers
Base Recalibration Tool On Usegalaxy
gatk written 4.4 years ago by KS40 • updated 4.4 years ago by Bjoern Gruening5.1k
3
votes
2
answers
1.3k
views
2
answers
Galaxy GATK 2 installation error
gatk galaxy software error written 4.3 years ago by do kadya130 • updated 4.3 years ago by Bjoern Gruening5.1k
0
votes
1
answer
1.0k
views
1
answer
Unified Genotyper in GATK issue
gatk written 4.0 years ago by anniekat0 • updated 4.0 years ago by Bjoern Gruening5.1k
1
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4
answers
1.4k
views
4
answers
3
votes
2
answers
2.4k
views
2
answers
How to use GATK on Galaxy
gatk help written 3.5 years ago by hachemi.zeraia10 • updated 3.5 years ago by Guy Reeves1.0k
2
votes
3
answers
1.3k
views
3
answers
0
votes
1
answer
1.2k
views
1
answer
GATK Haplotype Caller
gatk galaxy written 3.5 years ago by ecekartal890 • updated 3.4 years ago by Jennifer Hillman Jackson25k
0
votes
2
answers
851
views
2
answers
0
votes
0
answers
1.1k
views
0
answers
GATK2 tools installation
local galaxy gatk written 3.2 years ago by Marc30
3
votes
4
answers
1.2k
views
4
answers
contig order b37
gatk alignment bwa written 2.9 years ago by jane190 • updated 2.9 years ago by Jennifer Hillman Jackson25k
1
vote
1
answer
613
views
1
answer
HaplotypeCaller tool on galaxy
deprecated gatk galaxy written 19 months ago by ib70 • updated 19 months ago by Jennifer Hillman Jackson25k
0
votes
0
answers
499
views
0
answers
Condor In Bioinformatics Pipeline
gatk written 6.6 years ago by Nathan Panike40
0
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1
answer
1.1k
views
1
answer
Gatk Tools: Other Genome Available?
gatk written 6.4 years ago by Jean JAUBERT10 • updated 6.4 years ago by Jennifer Hillman Jackson25k
0
votes
0
answers
842
views
0
answers
0
votes
1
answer
1.3k
views
1
answer
Variant Annotation In Gatk Tools
gatk written 5.0 years ago by Yan He240 • updated 5.0 years ago by Jennifer Hillman Jackson25k
1
vote
1
answer
928
views
1
answer
Workflow Does Not Run
gatk written 4.8 years ago by garzetti100 • updated 4.8 years ago by Jennifer Hillman Jackson25k
0
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1
answer
1.4k
views
1
answer
Gatk - Base Recalibrator
gatk written 4.6 years ago by Bolduc, Francois10 • updated 4.6 years ago by Geraldine Van der Auwera40
0
votes
1
answer
969
views
1
answer
GATK runtime error
gatk galaxy alignment runtime error written 4.0 years ago by labella.matthew0 • updated 4.0 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
1.9k
views
1
answer
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